Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20hellerii_20[genbank_20GCA_5F001443345.1_202015-11-13] 25 sequences; 733,802,474 total letters Query= NC_012783.2 Length=226205 Score E Sequences producing significant alignments: (Bits) Value seq17 122 1e-22 seq19 104 3e-17 >seq17 Length=30456855 Score = 122 bits (134), Expect = 1e-22 Identities = 171/240 (71%), Gaps = 0/240 (0%) Strand=Plus/Minus Query 8936 GCGGTTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCC 8995 ||||| || |||||||| || || || || || ||||||||||| ||||||||| | Sbjct 29724387 GCGGTGTTGACGATGTCAAAGCCGACTGAGCCTCCAAAGGTGCTGGGCTTCCAGTACTCT 29724328 Query 8996 GGGGAGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATG 9055 || ||||| ||| ||| |||| || ||||| | ||| || |||||||||| ||| | Sbjct 29724327 GGTGAGCAAATGGGATTCCCCATCAGGCCTTTGAGGGAGAAAGGAGCCCCCATCTCCACC 29724268 Query 9056 ATGCTCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGT 9115 || |||| || || ||||| || || || || || |||| | ||| |||||| Sbjct 29724267 ATCGTCTCCCCAAAAATGGCGTTCGGCCGGGGCTTCTCCACGAGCAGGCCGAGGTAGAGC 29724208 Query 9116 TCGACAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACCT 9175 || ||||| || ||||| ||||| || | |||| ||| || || || || || ||| Sbjct 29724207 TCCACAGCGTCAACGTCTCCATACAGCTCCTCCAGTATGGCGGCCATTTCTTTTTCTCCT 29724148 Score = 96.9 bits (106), Expect = 5e-15 Identities = 112/151 (74%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 10387 TCACCTTTCACCCCGAGAGGAGTAGGGCAGTCACGAGGAACCGGAGGCAGAGTTCTCGTA 10446 |||||| || || | ||| || ||||||||| ||||| ||||| || | | ||| Sbjct 29721847 TCACCTACGACTCCCATAGGGGTTGGGCAGTCAGCCGGAACTGGAGGAAGGGCACGGGTA 29721788 Query 10447 TAATAGGATAGATTCGAAAATGCTTCCCAGCTATTGTAGCCATAATCTAAGTTGTAGAGC 10506 || ||||| ||||| ||| | ||||||||||| ||||| |||||||| ||||| Sbjct 29721787 TAGTAGGACAGATTGGAATAGGCTTCCCAGCTTTTGTATCCATAATCCGCATTGTAAGTA 29721728 Query 10507 GGGGGACTGTCAATCATCTCGGACCTGGCTA 10537 || |||||||||||||| | ||| | |||| Sbjct 29721727 GGAGGACTGTCAATCATATGGGATCGTGCTA 29721697 Score = 84.2 bits (92), Expect = 3e-11 Identities = 117/164 (71%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 9722 TAATGATTAGACGAGTGGTTTGAAACAACTGCTCGTCACCCCATTCCGGGTGTTCGTGTT 9781 ||| ||| || |||| ||| ||||| | |||||| |||| || ||||| | | | Sbjct 29722818 TAAGGATGAGCCGAGAGGTCTGAAAGAGTCTTTCGTCATCCCAGTCTGGGTGAACTTCCT 29722759 Query 9782 TGAGAACATCGCAGACCCTGTTGTGTTCTCTCAGCCATATGGTGGCGTACATCATTAAAC 9841 | | ||| || || |||| |||||| || | ||||| ||||||||||||||||| | | Sbjct 29722758 TCAAAACGTCACACACCCGGTTGTGCTCACGGAGCCAGATGGTGGCGTACATCATGAGGC 29722699 Query 9842 CCGGCACTAAACCAAACACTTCATTCCCCACTGCAAAGCGCAGA 9885 | || || | ||| ||| | || | || || || |||||| || Sbjct 29722698 CTGGGACCAGACCGAACGCCTCGTGGCCAACAGCGAAGCGCTGA 29722655 >seq19 Length=33316517 Score = 104 bits (114), Expect = 3e-17 Identities = 126/172 (73%), Gaps = 0/172 (0%) Strand=Plus/Minus Query 9722 TAATGATTAGACGAGTGGTTTGAAACAACTGCTCGTCACCCCATTCCGGGTGTTCGTGTT 9781 ||||||| || | ||||| || || | |||||||||| |||| ||| |||||| || Sbjct 26606624 TAATGATAAGTCTGGTGGTCTGGAAAAGCTGCTCGTCATCCCAGGTCGGATGTTCGCCTT 26606565 Query 9782 TGAGAACATCGCAGACCCTGTTGTGTTCTCTCAGCCATATGGTGGCGTACATCATTAAAC 9841 | || | || || ||||||||||| || |||||||| |||||||||||||| | | | Sbjct 26606564 TCAGGATGTCACACACCCTGTTGTGCTCCCTCAGCCAGATGGTGGCGTACATGGTGAGGC 26606505 Query 9842 CCGGCACTAAACCAAACACTTCATTCCCCACTGCAAAGCGCAGATCATCGGG 9893 | || || | || |||||||| | || || || | ||| | ||| |||| Sbjct 26606504 CTGGGACGAGCCCGAACACTTCCTGTCCGACGGCGAGCCGCTGCTCAGCGGG 26606453 Score = 93.3 bits (102), Expect = 6e-14 Identities = 165/239 (69%), Gaps = 4/239 (2%) Strand=Plus/Minus Query 8939 GTTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGG 8998 ||||| | ||||| ||||| || || || ||||||||||| ||||||||| | || Sbjct 26613562 GTTTTGATGATGTTGAAACCCGTCTCGCCTCCAAAGGTGCTGGGCTTCCAGTACTCTGGA 26613503 Query 8999 GAGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATG 9058 ||| |||| ||| | | || ||||||| ||| || || || |||| ||| | ||| Sbjct 26613502 GAGTTGATGGGATTCCCAAACAGGCCTTTCAGGGAGAAAGGGGCTCCCATCTCCACCATG 26613443 Query 9059 CTCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGTTCG 9118 ||||| ||||| |||| ||| || | ||| || | |||| ||| | || | || Sbjct 26613442 CTCTCTCCGAATATGGAGTTGGGGCGAGTTTTCTCCATCATGAGGCCGGGATAAAACTCC 26613383 Query 9119 ACAGCCTCGACGTCGCCATAGAGGGCTTCCAA--CTCGGCAGCTATCTCCTTCTCACCT 9175 | || || | |||||| ||||| | || || |||| |||| | || | |||||| Sbjct 26613382 AGGGCGTCAATGTCGCCGTAGAGCTCCTCTAAACCTCG--AGCTGTTTCTTCATCACCT 26613326 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 723727773835000