Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20hellerii_20[genbank_20GCA_5F001443345.1_202015-11-13] 25 sequences; 733,802,474 total letters Query= NC_012884.1 Length=31147 Score E Sequences producing significant alignments: (Bits) Value seq18 188 1e-43 >seq18 Length=80077792 Score = 188 bits (208), Expect = 1e-43 Identities = 161/199 (81%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 28486 TAGCATATGCAACTTTTACGCTTGCGGTTAACCGTAATTTTAAAAATCAAAATGGTGAAC 28545 ||||| ||| |||||||| ||||| || ||||||| ||||| | ||||||||| |||| Sbjct 59386091 TAGCAGTTGCGACTTTTACTCTTGCAGTAAACCGTACGTTTAAGAGTCAAAATGGCGAAC 59386032 Query 28546 GTGAAGCTGATTTCATTAATATCGTGATTTGGCGTCAGCAAGCTGAAAATTTAGCTAACT 28605 |||| |||||||| || ||| ||||||| |||||||| || ||||||||| | ||||||| Sbjct 59386031 GTGAGGCTGATTTTATCAATGTCGTGATGTGGCGTCAACAGGCTGAAAATCTTGCTAACT 59385972 Query 28606 GGGCTAAAAAAGGGACTCTTTTAGGCATTACTGGTCGAATTCAGACCCGCAATTATGAAA 28665 ||||||||||||| ||||| | || || || || || || ||||| || | ||| || | Sbjct 59385971 GGGCTAAAAAAGGCTCTCTTATCGGGATCACAGGCCGTATCCAGACTCGTAGTTACGATA 59385912 Query 28666 ACCAACAAGGTCAGCGTGT 28684 |||| ||||| || ||||| Sbjct 59385911 ACCAGCAAGGACAACGTGT 59385893 Score = 179 bits (198), Expect = 7e-41 Identities = 202/271 (75%), Gaps = 6/271 (2%) Strand=Plus/Minus Query 24357 GAAAAACGAATTAGCA------AAAGGAAGTTACTTAACAGATTTGCAAAAGCTTGATGG 24410 || ||||||||||||| ||||| || |||||||| || ||||| ||||| || Sbjct 30108073 GACAAACGAATTAGCACAAACAAAAGGCGCATATTTAACAGACTTACAAAAACTTGACGG 30108014 Query 24411 AAATACTTTGCGAGATTTTGTAGACCCGAAGCATCAAGCGAGTCCGCAAGAACTACAAGC 24470 | || ||| || |||| || ||||| || |||||||| || ||||| ||| | || | Sbjct 30108013 AGCAACCTTGAGAAATTTCGTTGACCCAAAACATCAAGCAAGCCCGCAGGAATTGCAGAC 30107954 Query 24471 TCTTTTAGCGATTGTGAAAGGACGTAATTTAAACCCTTTCACGAAAGAAGTTTACTTTAT 24530 | ||||| ||||| ||| |||||||||||||| ||||||||||||||||| ||||| Sbjct 30107953 ATTGTTAGCTATTGTTAAAAATCGTAATTTAAACCCGTTCACGAAAGAAGTTTATTTTAT 30107894 Query 24531 CAAATACGGCTCTGCGCCTGCGCAAATCGTAGTCAGTAAAGAAGCAATTATGAAGCGCGC 24590 ||||||||| || || |||||||| || || || || | ||||| ||||| Sbjct 30107893 TAAATACGGCAACAATCCCGCTCAAATCGTTGTTTCAAAGGATGCCTTCATGAAACGCGC 30107834 Query 24591 AGAAGAAAATCCGGATTTTGACGGATTTGAA 24621 ||| |||||| | ||| ||| ||||||||| Sbjct 30107833 TGAACAAAATCAGAATTATGATGGATTTGAA 30107803 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 99548770446450