Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20hellerii_20[genbank_20GCA_5F001443345.1_202015-11-13] 25 sequences; 733,802,474 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq25 131 2e-25 seq13 98.7 1e-15 seq18 91.5 2e-13 seq20 89.7 6e-13 >seq25 Length=32766887 Score = 131 bits (144), Expect = 2e-25 Identities = 890/1406 (63%), Gaps = 58/1406 (4%) Strand=Plus/Plus Query 115903 TAGATGTTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAG 115962 ||||||||| | ||||| | ||| | | |||| ||||| |||| ||| ||||| ||||| Sbjct 10520014 TAGATGTTGCTGGTGTACGCCTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAC 10520073 Query 115963 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTTGCGGAGACCCACCCCCCTAATGCGTTCC 116022 || ||||||||||| |||| || |||||||| | | || | || |||| Sbjct 10520074 GCCGTGGGCATGGGCGCCAGCAGCAGGCTGTTCCTCACGCCGTGTTTGCCGATCTTTTCC 10520133 Query 116023 TTGAGGGCGTCCCAGTCGTA---GTTGAGCTTTGTCTCCCCCTCCCACATATCAAACTGG 116079 || || | |||||| | || | | |||| | |||||||| || ||||| Sbjct 10520134 TTCAGCAGCTTCCAGTCCCAAAGGTCGGTCGGCGTCTTC---TCCCACATGTCGTACTGG 10520190 Query 116080 AGGATACCTTGG--GACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCG 116137 ||||| || | | |||| ||||| ||||| | ||||| || ||||| | | | Sbjct 10520191 AGGATGCCCTTGCTGACG--GGCGAGCCCTCGTACGTCTCGTAGGGGCCGAGCTCTGCGG 10520248 Query 116138 CCAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCA 116197 | | ||| |||| ||||| ||||| ||||| || || ||||| || || | || | Sbjct 10520249 CGAGCTCGCAGCTGGCCTCCAGGGCGGCGTGGTAGATGGTCTCGAACATCTGGATGTTGA 10520308 Query 116198 TTGCCTTGGCCTCGTCGGAAT--CAAACGCGAGACGGCACAAAATAAATACATCCGCGAG 116255 || || ||| ||| | | || | | | || || || || | || || || Sbjct 10520309 GCAGCTGAGCTTCG--GGACTTTCGAAAGGGTGCCGCATCAGGATGAAGGCGTCGGCCAG 10520366 Query 116256 ACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTT-TCGAGCGGTCTCCA 116314 ||| ||||| |||| || || || | || | | | || || | ||| || | Sbjct 10520367 ACCCTGGACGCCGATCCCGATCGGCCTGTGGCGCTTGTTGGAAGTCTCG-GCTTCGGGAA 10520425 Query 116315 CGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTT 116374 | || || | || | ||||| | | | || || ||||| || ||||| |||| Sbjct 10520426 CCGGGTAGTAGTTGATGTCGATGATCTTGTTGAGGTTTTTCACGATTACCTTGGTGACGG 10520485 Query 116375 CATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGA 116434 ||||| | | | || ||| | || |||| |||| ||| | ||||||| Sbjct 10520486 AGGCCAGCTTCTTGAAGTCGAAAGTCCG---CTCTGGCGTGACGTACATGTTGAGGGCGA 10520542 Query 116435 TTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTAC 116494 | || ||||| || || || | ||| ||||| |||||||| | | ||||| | Sbjct 10520543 TGGAGGCCAGGTTGCAGACGGCCACCTCGTCCTTGCTGGTGTACTCCACCACCTCCGTGC 10520602 Query 116495 ACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCAT 116554 | | || | ||| |||||||||| ||||| || || ||| |||| || || | Sbjct 10520603 AGAGGTTGCTGCACTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTCCTGTTGCAAGCGT 10520662 Query 116555 CCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCATA 116614 ||||||||||||| || || ||||| || || || ||||||| || || || | ||| | Sbjct 10520663 CCTTGTAGAGCATGTAGGGGGTCCCGGTTTCGGTCTGGGACTCGATGATGGCGTACCAGA 10520722 Query 116615 -CATCGGCGGCTGGCACAGTGGCGTTGGCTCGCCCCTCCTCCTCGTACTTTGTGTAGAGG 116673 | | ||| || ||| || ||| ||| |||| ||| || || |||||||| Sbjct 10520723 GCTGCTGCGCCT-TCACCACCCTTTTCACTCTCCCTTCCTTCTCATATTTGGTGTAGAGC 10520781 Query 116674 GCCTCAAACTCTTCACCCACAGC-CTCTGAGAGCCCTGGTGCCTTATCTGGACAGAAGAG 116732 ||| ||||| || ||| |||| ||| ||||| || || ||||| | | Sbjct 10520782 TTCTCGAACTCCTCTCCC-CAGCACTCGTCCAGCCCAGGACACTCGCTGGGACACATCAA 10520840 Query 116733 AGACCATTGACCACCCT--CCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCC 116790 ||||| | || | ||| || | ||||||||| ||||| |||||||| | || Sbjct 10520841 GGACCA--GTCCTGGTTGCTCTCCACTCTCTTCATGAACAGGTCAGGGATCCACAAGGCG 10520898 Query 116791 GAGAAGAGATC-CCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAA 116849 |||| || || | | | ||| || | | || || || || ||||| || Sbjct 10520899 TAGAAAAGGTCTCTGGCTCTCTGCTCCTCCTTTCCTGTG-TTCTTCTTCAGCTCCAGGAA 10520957 Query 116850 GTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCC----CTTGCGAC 116905 ||| | | || |||||| || ||||| |||| |||| | ||| || | Sbjct 10520958 GTCGAACACGTCGAAGTGCCATGGCTCCAGATACATGGCGAAGGCCCCGGGTCTCTTGTT 10521017 Query 116906 GACCAGCCTGGTTTACATACCTCGCCGTTGCGTTAAATACGCGAAGCATTGGAATGATAC 116965 | || |||||| || |||| || || ||| | || | ||||| || | | | Sbjct 10521018 G-CCGCCCTGGTCAACGTACCGAGCGGTGTTGTTGTAAACTCTCAGCATCGGCACCAACC 10521076 Query 116966 CATCAGATTGGCCATTTGTCCCCCGAATACGAGACTTGTTGGCT-CTGAC-ATCG--TGG 117021 | | || | ||| || || || | ||| ||| | | | | | |||| || Sbjct 10521077 CGTTGGAGTTGCCGTTGGTGCC-----TGCGA----TGTAGCTTCCCGTCGATCGGATGC 10521127 Query 117022 ATGT-----GCATACCAATACCCCCTGCCCACTTTGAGATTTGTGCGCACTCCGTGAGAC 117076 | | || || || || || || |||| || || | ||||||| | | || Sbjct 10521128 AGCTCACCGCCACGCCGATCCCGCCAGCGGACTTGGAAATGAGCGCGCACTGCTTCAGGG 10521187 Query 117077 TGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTT 117136 || ||||||| || ||||| ||| |||| | |||| |||||||| || |||| | Sbjct 10521188 TGTCGTAGATGCCTTCGATGCTGTCGTCCTTCATGGCGAGCAGGAAGCAACTGGACAGCT 10521247 Query 117137 GTGGCC--TTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACCT-T 117193 | |||| ||| || || |||||||||||||| || | |||||| ||||| || | | Sbjct 10521248 GCGGCCGGTTG--GTCCCGGCGTTGAAGAGGGTCGGAGAGGCGTGGGTGAAC-CACTTCT 10521304 Query 117194 GGGACATCTTATCGTAGGTCTCCAAGACAGAGGGAATGTCTTCCCCGTGAATACCGATTG 117253 |||| | ||||||||| | | | | | |||||| |||||| || || | | Sbjct 10521305 CCGACAGGAGGTTGTAGGTCTCGACGGCGGCGTCGATGTCTCGCCCGTGGATCCCAACCG 10521364 Query 117254 AGACCCGCATAAACATGTATTGGGGT 117279 | |||| ||| | ||||| || ||| Sbjct 10521365 ACACCCTCATGAGCATGTGCTGCGGT 10521390 >seq13 Length=27080333 Score = 98.7 bits (108), Expect = 1e-15 Identities = 77/92 (84%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 115903 TAGATGTTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAG 115962 ||||||||| | ||||||| ||||| | |||| |||||||||||||| ||||| ||||| Sbjct 15277133 TAGATGTTGCTTGTGTATGCCTCAATGGACTCGTTGTTACCCAAGATCTGGGCAGTGGAA 15277192 Query 115963 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTT 115994 ||||||||||| || |||| || || ||||| Sbjct 15277193 GCTGTGGGCATTGGGGCCAAAAGCAGACTGTT 15277224 >seq18 Length=80077792 Score = 91.5 bits (100), Expect = 2e-13 Identities = 107/142 (75%), Gaps = 2/142 (1%) Strand=Plus/Plus Query 12704 ATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCCGC 12763 |||||| || ||||| ||||| || || || || | ||| ||||||||||| || Sbjct 51266047 ATCAAAACGTCCTGGACGGAGAAGAGCTGGATCTAGAACATCTGAACGGTTCGTCGCAGC 51266106 Query 12764 GATGACAACGATGCCCGTCTCGTTA-TCGAAGCCATCCATCTCAGTCAAGAGTTGATTGA 12822 ||| || | ||| ||| || | || || |||||||| ||| |||||||||| || | Sbjct 51266107 GATAACGATGAT-CCCTTCATTTCCCTCAAAACCATCCATTTCAATCAAGAGTTGGTTCA 51266165 Query 12823 TGGTTTGTTCACGTTCATCATT 12844 ||||||||||||||||||||| Sbjct 51266166 AGGTTTGTTCACGTTCATCATT 51266187 >seq20 Length=26302745 Score = 89.7 bits (98), Expect = 6e-13 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 127553 ATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTCTTCAACCAGAAAATC 127612 |||||||| || ||| || || ||||||||||| || | |||||||| |||| | || Sbjct 12394084 ATGAGTTCGTTGGAGTAGGTAAGGCCTGGCATGAGGCCTCTCTTCTTCAGCCAGTAGATA 12394143 Query 127613 GCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAACGCAAATAGACGCTC 127671 ||| |||||||| |||||||| ||||||||||| || || || | |||||||| Sbjct 12394144 GCAGCGAATGAGCCTGAGAAGAAAATCCCCTCCACTGCTGCAAAAGCCACAAGACGCTC 12394202 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613507008279000