Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20hellerii_20[genbank_20GCA_5F001443345.1_202015-11-13] 25 sequences; 733,802,474 total letters Query= NC_013598.1 Length=35525 Score E Sequences producing significant alignments: (Bits) Value seq18 215 1e-51 >seq18 Length=80077792 Score = 215 bits (238), Expect = 1e-51 Identities = 556/833 (67%), Gaps = 18/833 (2%) Strand=Plus/Minus Query 727 GATGAGCCTATCTATATCCTAGCGGGGACATCGTCTACAGCGATTCAAAACAACATACTG 786 ||||| || || ||||| | || ||||| || || || |||| ||||| || || | Sbjct 30099915 GATGAACCGATGTATATTTTGGCTGGGACGTCTTCAACTTCGATACAAAATAATATTATC 30099856 Query 787 CAAGAACTTTATAATAAATACGGATTTGAGCCCAAGTATGATAAGCATGGGTCTTTCGTG 846 |||||||| ||||| | | | ||||||| || ||||| || || || | || Sbjct 30099855 CAAGAACTCTATAACATGTTTGATATTGAGCCAAAATATGACAAACACGGAGCGTTTACT 30099796 Query 847 TTTTGTGGTGTGAAAGTCGTACAAGTCTACACTGGATCTATCTCTGGTCTTAAACGTGCC 906 |||| || || || || | ||||| || ||||| || || || ||| | ||||| || Sbjct 30099795 CTTTGCGGAGTCAAGGTTATTCAAGTTTATACTGGTTCAATTTCAGGTTTAAAACGAGCT 30099736 Query 907 CGCGGTTTTACAGCTTTCGGAGCTTACGTTAACGAGGCATCACTAGCAAACGAGATTGTT 966 || ||||| |||||||| ||||| || || ||||||||||| | || || || || Sbjct 30099735 CGTGGTTTCACAGCTTTTGGAGCCTATGTGAACGAGGCATCGTTGGCCAATGAACAAGTG 30099676 Query 967 TTCAAGGAGATTATATCACGGTGCTCAGGTGAGGGGGCTCGTATAGTTTGGGACAGTAAC 1026 ||||| || || || ||||| || || || ||||| || || || |||||||| |||||| Sbjct 30099675 TTCAAAGAAATCATCTCACGTTGTTCGGGAGAGGGTGCACGGATTGTTTGGGATAGTAAC 30099616 Query 1027 CCAGACAACCCTAACCATTGGCTTAACCGAGACTATATTGGCAAGAACGACGGCAAGATT 1086 ||||||| ||| | ||| ||||| | || || ||||| | ||||| | ||| Sbjct 30099615 CCAGACATCCCGACCCACTGGCTCAGACGGGATTATATCAACTCTGGCGACGATATGATC 30099556 Query 1087 ATAGATTTTAGTTTCAAGCTCGATGATAATACGTTCTTATCAAAACGCTATATTGAATCT 1146 ||||| ||| ||||||||| ||||||||||| ||| | || | | || ||| | Sbjct 30099555 ATAGACTTTCATTTCAAGCTAGATGATAATACATTCATGTCTGACAGATACCGCGAAAAT 30099496 Query 1147 ATCAAAGCAGCTACGCCCAAGGGTAAATTCTATGATAGAGACATCCTAGGTCGTTGGACT 1206 ||||| || || || ||| ||| ||||| |||||||||| ||| ||| | Sbjct 30099495 ATCAAGAATGCCACACCAGCTGGTGTATTTTATGACCGAGACATCCTTGGTTTGTGGGCG 30099436 Query 1207 GTTGCAGAAGGCGCTATTTATGCCGATTATGACAGCAAGATACACG-TAGTAGATGAATT 1265 || || |||| | | ||| |||| | ||| ||| | | | | || ||| | | Sbjct 30099435 ACTGGTGAGGGCGTTGTATATCGTGATTTT---AGCGAGA-ATATGTTTGTGGATAACGT 30099380 Query 1266 GCCAG-ACATGAAACGTTA-TTTCGGC-GGTATTGACTGGGGTTATACTCACTACGGCTC 1322 |||| | || ||| | | | || ||| |||||||||| ||| |||| ||||| Sbjct 30099379 ACCAGAAGATATAACTAAAGTCTATGCTGGTGTTGACTGGGGGTATGAACACTTTGGCTC 30099320 Query 1323 TATCGTGGTAGTTGGTGAAGGTGTAGATGG--CAACTACTACCTCGTTGACGGTGTGGCG 1380 ||| || || || || ||| ||| || || | || || | || | || Sbjct 30099319 TATTGTAGTTGTCGGAGAAACCTCAGACGGTTCAGTT--TATATCTTAGAGGAACACGCT 30099262 Query 1381 GCGCAATTTAAAGAGATAGACTGGTGGGTAGAACAAAC-AAGGAAACTGACCGGCATCTA 1439 |||| |||||||| |||| |||||||| | | || |||| | | || Sbjct 30099261 CATCAATACAAAGAGATTGACTTTTGGGTAGACCTTGCTAAAGAAA-TCAAAAAACGATA 30099203 Query 1440 TGGGAACATTCCGTTCTATGCTGACAGTGCCCGCCCTGAGCACGTAGCAAGATTTGAGAG 1499 ||| || ||| |||| | || || || || || ||||| ||||| || |||||| |||| Sbjct 30099202 TGGCAATATTACGTTTTGGGCAGATAGCGCACGACCTGAACACGTTGCTAGATTTCAGAG 30099143 Query 1500 TGAAGGATT--TGATATTAGCAACGCTAACAAGTCAGTGATGGCTGGCATCGA 1550 || | | || ||| ||||||||||| | || || |||| ||||| Sbjct 30099142 AGAGCAACTGAAGACATT--TAACGCTAACAAAGCGGTCTTGTCTGGTATCGA 30099092 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 113558366287350