Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20hellerii_20[genbank_20GCA_5F001443345.1_202015-11-13] 25 sequences; 733,802,474 total letters Query= NC_013645.1 Length=34882 Score E Sequences producing significant alignments: (Bits) Value seq18 136 9e-28 >seq18 Length=80077792 Score = 136 bits (150), Expect = 9e-28 Identities = 152/203 (75%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 29215 AATATCGCAGTAGCATCTTTCAGCCTTGCGGTTAACCGTAACTTTAAGGATGCTAATGGT 29274 ||| | ||||| || |||| | ||||| || ||||||| |||||| | ||||| Sbjct 59386095 AATGTAGCAGTTGCGACTTTTACTCTTGCAGTAAACCGTACGTTTAAGAGTCAAAATGGC 59386036 Query 29275 GAGCGTGAAACTGACTTTATCAATTGCGTTATCTGGAGACAGCAAGCTGAAAACTTGGCT 29334 || ||||| |||| ||||||||| ||| || ||| | || || |||||||| | ||| Sbjct 59386035 GAACGTGAGGCTGATTTTATCAATGTCGTGATGTGGCGTCAACAGGCTGAAAATCTTGCT 59385976 Query 29335 AACTGGGCTAAGAAAGGAGCATTGATTGGTATTACTGGACGTATTCAGACTCGTAGCTAT 29394 ||||||||||| ||||| | | || || || || || ||||| ||||||||||| || Sbjct 59385975 AACTGGGCTAAAAAAGGCTCTCTTATCGGGATCACAGGCCGTATCCAGACTCGTAGTTAC 59385916 Query 29395 GAAAATCAACAAGGTCAACGTGT 29417 || || || ||||| |||||||| Sbjct 59385915 GATAACCAGCAAGGACAACGTGT 59385893 Score = 114 bits (126), Expect = 3e-21 Identities = 134/180 (74%), Gaps = 6/180 (3%) Strand=Plus/Minus Query 23926 GTCAAAACCGCCTACAAAGATTGGTTCCCACGTATGACTGAATATGGTTTTACAGAGGGT 23985 ||||| || ||| || || ||||| || || ||| ||||| || ||| |||| Sbjct 61811282 GTCAAGACGCGCTATAACGACTGGTTTCCGCGCATGCTCGAATACGGCTTTGAGCAGGGC 61811223 Query 23986 GAAGACTTTAGCTCATTTTTGAGCAAAA-----GTACCGG-AGGGCGGCCAAGCCAAGAT 24039 |||| ||| ||||||||||||||||| | || || ||| || || || ||||| Sbjct 61811222 AAAGAGTTTTACTCATTTTTGAGCAAAACCCCCGAACAGGCAGGACGTCCCCGCGAAGAT 61811163 Query 24040 CACATCATTAAGTTGGACATGGCGAAAGAAATCGCAATGATTCAGCGAACAGACAAAGGC 24099 |||||||| | |||||||||| ||||||||||| ||||||||||| || || |||||| Sbjct 61811162 CACATCATCAGCCTGGACATGGCCAAAGAAATCGCCATGATTCAGCGCACCGAAAAAGGC 61811103 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 111500766898200