Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20hellerii_20[genbank_20GCA_5F001443345.1_202015-11-13] 25 sequences; 733,802,474 total letters Query= NC_013646.1 Length=38764 Score E Sequences producing significant alignments: (Bits) Value seq18 161 2e-35 >seq18 Length=80077792 Score = 161 bits (178), Expect = 2e-35 Identities = 629/975 (65%), Gaps = 43/975 (4%) Strand=Plus/Minus Query 17974 ACATAAAAGAACCAATGTATATATTGGCTGGTGTGTCTAGTTCAACT---ATTCAAAAGA 18030 |||| | ||||| |||||||| |||||||| |||| |||||| || ||||| | Sbjct 30099920 ACATTGATGAACCGATGTATATTTTGGCTGGGACGTCT---TCAACTTCGATACAAAATA 30099864 Query 18031 ATATACTTCAAGAGTTATACAATACGTATGATATTGAACCTAAATTTGATAAACATGGTA 18090 |||| | ||||| | || || | || ||||||||| || |||| ||| ||||| || Sbjct 30099863 ATATTATCCAAGAACTCTATAACATGTTTGATATTGAGCCAAAATATGACAAACACGGAG 30099804 Query 18091 ATTTTAAATTATTTGGTGTTAAAGTCGTACAGGCCTATACAGGT--AATATCGGCGGCGT 18148 |||| | | || || || || | || | ||||| ||| ||| || | || Sbjct 30099803 CGTTTACTCTTTGCGGAGTCAAGGTTATTCAAGTTTATACTGGTTCAATTTCAG----GT 30099748 Query 18149 TG-----GTTCTATACGTGGTATGACAGCGTATGGAGCTTATATTAATGAAGCTTCACTT 18203 | | || |||||| | ||||| | |||||| ||| | || || || || | Sbjct 30099747 TTAAAACGAGCT---CGTGGTTTCACAGCTTTTGGAGCCTATGTGAACGAGGCATCGTTG 30099691 Query 18204 GCTAAACAAGAGGTTTTTGCAGAAATAGTTTCCCGTTGTTCAGCGACTGGTGCACGTATA 18263 || || || | || || |||||| | || |||||||| | |||||||| || Sbjct 30099690 GCCAATGAACAAGTGTTCAAAGAAATCATCTCACGTTGTTCGGGAGAGGGTGCACGGATT 30099631 Query 18264 TTAGCTGATACAAATCCAGACAACCCCGAGCATTGGTTGAAAAAAGAATATATAGATAAT 18323 | |||| || ||||||| ||| || ||| | | | || ||||| || Sbjct 30099630 GTTTGGGATAGTAACCCAGACATCCCGACCCACTGGCTCAGACGGGATTATATC---AAC 30099574 Query 18324 TCAAGTAAAAGTAT--TCAATCA-TTTCATTTTGGTTTAGACGATAACACATTTTTAAGT 18380 || | | ||| ||| | |||||||| |||| ||||| ||||| | | Sbjct 30099573 TCTGGCGACGATATGATCATAGACTTTCATTTCAAGCTAGATGATAATACATTCATGTCT 30099514 Query 18381 GAAAGATATAGAACGAACAT-TAAAGCTAGC-ACACCTAGTGGAATGTTTTATGACCGAG 18438 || ||||| | |||| || | ||| || ||||| ||| | ||||||||||||| Sbjct 30099513 GACAGATACCG--CGAAAATATCAAGAATGCCACACCAGCTGGTGTATTTTATGACCGAG 30099456 Query 18439 ATATAAAAGGTTTGTGGGTTTCTGCTGATGGGGTCGTATATAAAGATTTTGATGCTAACA 18498 | || |||||||||| ||| ||| || || |||||| |||||| | || Sbjct 30099455 ACATCCTTGGTTTGTGGGCGACTGGTGAGGGCGTTGTATATCGTGATTTTAGCGAGAA-- 30099398 Query 18499 AACACTATATTGATTCATCAGATTTGCCACCAT-TAGCAAAATATTATTGTGGAGTTGAC 18557 ||| || | || | | | || || | ||| ||| ||| |||||| Sbjct 30099397 -----TATGTTTGTGGATAACGTACCAGAAGATATAACTAAAGTCTATGCTGGTGTTGAC 30099343 Query 18558 TGGGGCTATGATCATTGGGGGTCAATTGTAGTTATAGGAGAAACAGAAGACGGAACTGCG 18617 ||||| ||||| || | || || ||||||||| | |||||||| |||||| | | Sbjct 30099342 TGGGGGTATGAACACTTTGGCTCTATTGTAGTTGTCGGAGAAACCTCAGACGGTTCAGTT 30099283 Query 18618 TATTTAGTTGAAGAACACGCCTCTCAATATGAGGAAATTGATTATTGGGTTGGTATTGCA 18677 ||| | | || |||||||| |||||| | || ||||| | |||||| | |||| Sbjct 30099282 TATATCTTAGAGGAACACGCTCATCAATACAAAGAGATTGACTTTTGGGTAGACCTTGCT 30099223 Query 18678 AAAGAAATTCAAGCACGATATGGCGGGAGAATTCCTTTCTATTGTGATTCGGCTCGTCCA 18737 |||||||| || |||||||||| | ||| | || | ||| || || || Sbjct 30099222 AAAGAAATCAAAAAACGATATGGC---AATATTACGTTTTGGGCAGATAGCGCACGACCT 30099166 Query 18738 GAACACGTATCTAGATTTGTAAGGGAAGGACTAAATGCCATCAATGCTTTTAAAGCTCGC 18797 |||||||| |||||||| || || ||| || | | || ||| ||||| | Sbjct 30099165 GAACACGTTGCTAGATTTCAGAGAGAGCAACTGAAGACATTTAACGCTAACAAAGCGGTC 30099106 Query 18798 TTATCTGGTGTCGAATCAGTAGCGAAGCGGTTCAAAACGAATAGATTATATATT-TGTCG 18856 || |||||| ||||| |||||| |||| | | ||| | | || | | || | || Sbjct 30099105 TTGTCTGGTATCGAAGAAGTAGCCAAGCTGATGAAAGCTGGGCGCTTTTTTGTTGTATC- 30099047 Query 18857 AGACAAAGTTAAAAAGTTTAGAGATGAGATTTATCAATATATATGGAATaaaaaaaCTGG 18916 | | || || | ||||| | ||||||| | || ||||| |||||||| |||| || || Sbjct 30099046 AAATAAGGTCAGCAAGTTCAAAGATGAGGTCTACCAATACATATGGAACGAAAAGACAGG 30098987 Query 18917 TGAGCCTATTAAAGA 18931 ||||| | ||||| Sbjct 30098986 CGAGCCAGTGAAAGA 30098972 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 123923163210300