Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20hellerii_20[genbank_20GCA_5F001443345.1_202015-11-13] 25 sequences; 733,802,474 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq25 194 3e-44 seq17 86.0 1e-11 seq13 84.2 3e-11 >seq25 Length=32766887 Score = 194 bits (214), Expect = 3e-44 Identities = 582/889 (65%), Gaps = 22/889 (2%) Strand=Plus/Plus Query 204883 CTCCACGATCTCGGTGCACAAGTTACCGCACTTCACCACCCCCACATGCTGCTGGTTAGA 204942 |||||| | ||| ||||| | ||| | |||||| | |||| | ||||||||| Sbjct 10520586 CTCCACCACCTCCGTGCAGAGGTTGCTGCACTTGATGGTGCCCAGGTTCTGCTGGTTGCT 10520645 Query 204943 CTTGCGGTTACAGGAGTCCTTGTACATCATGAACGGCATTCCGTTCTCCATCTGAGA-TC 205001 ||| | ||| || | ||||||||| | |||| | || | ||| | || |||| || || Sbjct 10520646 CTTCCTGTTGCAAGCGTCCTTGTAGAGCATGTAGGGGGTCCCGGTTTCGGTCTGGGACTC 10520705 Query 205002 GCAGAATGTGGGTCCACAATTCGCGAGCCTCCACTTGC---TTCACGTACATCCCTTGAG 205058 | || || | ||| | | | |||| ||| | ||||| |||||| Sbjct 10520706 GATGA-TGGCGTACCAGAGCTGCTGCGCCTTCACCACCCTTTTCACTC---TCCCTTCCT 10520761 Query 205059 ACTCGTATTTTGTGTACAGCGCCACAAAGTCAGAACC---GTACACGTCCATCAGCCCTG 205115 ||| ||||| ||||| ||| | | || || || | || |||||| |||| | Sbjct 10520762 TCTCATATTTGGTGTAGAGCTTCTCGAACTCCTCTCCCCAGCACTCGTCCA---GCCCAG 10520818 Query 205116 GACATTTTTTGGGACACATCAGAGACCACATCTGATCGTCTTTCACCCTCTCCATAAACA 205175 |||| | |||||||||||| ||||| ||| | | | ||| |||| ||| |||| Sbjct 10520819 GACACTCGCTGGGACACATCAAGGACCAGTCCTGGTTGCTCTCCACTCTCTTCATGAACA 10520878 Query 205176 GGTCGCTGATCCACAGGCCGTAAAACAGATCACGGGCCCTAATTCCGTCGTCTCCAAGGT 205235 |||| |||||||| | |||| || || || | ||| || | || | ||| || Sbjct 10520879 GGTCAGGGATCCACAAGGCGTAGAAAAGGTCTCTGGCTCTCTGCTCCTCCTTTCCTGTGT 10520938 Query 205236 TCTTTTTCAAGTCCAGCCAAGCCGCA-ATGTCGGCGTGCCACGGCTCTAACCACACGGCC 205294 |||| |||| ||||| ||| || | | |||| |||||| ||||| | ||| ||| Sbjct 10520939 TCTTCTTCAGCTCCAG-GAAGTCGAACACGTCGAAGTGCCATGGCTCCAGATACATGGCG 10520997 Query 205295 ATTGCGCCTGGCCTCTTGTTCCCACCCTGGTCCACCATGCGAGTCATCGCGTTGAAAACT 205354 | || || || |||||||| || |||||||| || |||| | |||| ||||| Sbjct 10520998 AAGGCCCCGGGTCTCTTGTTGCCGCCCTGGTCAACGTACCGAGCGGTGTTGTTGTAAACT 10521057 Query 205355 CGCAGCATCGGCACCAGACCGTTGGCGGTCCCGTTCGTGCTGTTGATGGCCGAGCCTTCA 205414 | |||||||||||||| ||||||| | | ||||| |||| |||| ||| | | Sbjct 10521058 CTCAGCATCGGCACCAACCCGTTGGAGTTGCCGTTGGTGCCTGCGATG---TAGCTTCCC 10521114 Query 205415 GCCCTCACGTTGGAG---ATGGCCGCGCCAATCCCGCCAGAACACTTGGCGATCTGGGCG 205471 | | | || || | ||| |||| |||||||||| |||||| || | ||| Sbjct 10521115 GTCGATCGGATGCAGCTCACCGCCACGCCGATCCCGCCAGCGGACTTGGAAATGAGCGCG 10521174 Query 205472 CACTCTTGCAGAGTGCTGTAGATGCCTGCGATGGAATCGTCCGCCAGTGTCACCAGATAG 205531 |||| | ||| ||| |||||||||| ||||| |||||| || | | ||| || Sbjct 10521175 CACTGCTTCAGGGTGTCGTAGATGCCTTCGATGCTGTCGTCCTTCATGGCGAGCAGGAAG 10521234 Query 205532 CACGAAGCCAGCTTGGCAAAGTTGGTGCCCGCGTGGAAGAGCGTGGGGCTGGCGTGGCTG 205591 || | ||||| | |||||| || |||| |||||| || || ||||||| || Sbjct 10521235 CAACTGGACAGCTGCGGCCGGTTGGTCCCGGCGTTGAAGAGGGTCGGAGAGGCGTGGGTG 10521294 Query 205592 AAGCGCTTCTCGCTCAAACACCTGTAGGTCTCCAGCACGCTCTCCAGATCGAAGCCGTGA 205651 || | |||||| || |||||||||| | || || | || ||||| Sbjct 10521295 AACCACTTCTCCGACAGGAGGTTGTAGGTCTCGACGGCGGCGTCGATGTCTCGCCCGTGG 10521354 Query 205652 ATACCTATGGCGATCCTCATGAAGAGGTGTTGAGGTCTCTCCATCACCCTCTCGTTCACC 205711 || || | | | |||||||| | ||| || |||| ||| ||| || |||| | | Sbjct 10521355 ATCCCAACCGACACCCTCATGAGCATGTGCTGCGGTCGCTCGGCCACTTTCCCGTTGATC 10521414 Query 205712 TTGAGCAGATAGGCTCTCTCTAGGGTGCGGATGGCAAAAAAGTTGAAGG 205760 || ||||| |||| | ||| || || || | | || |||||| ||| Sbjct 10521415 TTCAGCAGGTAGGAACGCTCCAGAGTCTTGAAGCCGAAGAAGTTGTAGG 10521463 Score = 181 bits (200), Expect = 2e-40 Identities = 296/421 (70%), Gaps = 8/421 (2%) Strand=Plus/Plus Query 204103 GATCGAGCCGTTGTCGGCCATCAGTCTCATCCTCGTCTCCTCCCCCCACATGCCCAACCT 204162 ||| || ||||||| ||| ||||| | || || ||||||| ||||| ||| | Sbjct 10519890 GATGGATCCGTTGTTGGCGATCAGCTTGTTCTTCATCTCCTCGTTCCACAGGCCGCGCTC 10519949 Query 204163 GATCAGCTCCCGCACCAGGTGGGGGTTGATGATCTGAAAGTCTCCGGACAGCACCCCTCG 204222 |||| ||| | ||||| ||||||| |||||| || |||||||||||||||| || Sbjct 10519950 CGTCAGATCCTTGAGGAGGTGAGGGTTGACGATCTGGAACTCTCCGGACAGCACCCTGCG 10520009 Query 204223 GGTGAACAGGTTGTTGGTGAATGGTTCGAACGCCTCGTTGTTGCCGAAAATCTGAGCGGT 204282 |||| | | |||| ||||| | | |||| | |||||||||||| | ||||| ||||| Sbjct 10520010 GGTGTAGATGTTGCTGGTGTACGCCTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGT 10520069 Query 204283 GCTGGCCGTGGGCATGGGAGCCAGGAGCAGGGAGTTGCGCACACCGTATTTTTGGACCCT 204342 | |||||||||||||| ||||| |||||| ||| | ||| |||| ||| || | | Sbjct 10520070 GGACGCCGTGGGCATGGGCGCCAGCAGCAGGCTGTTCCTCACGCCGTGTTTGCCGATCTT 10520129 Query 204343 GCGCTTCAGAGAGGTCCAGTCGTGCA--TCGCACTGGGT-TTCACGCCCCACATGTCGAA 204399 |||||| ||||||| | ||| | | || ||| ||||||||||| | Sbjct 10520130 TTCCTTCAGCAGCTTCCAGTCCCAAAGGTCGGTCGGCGTCTTC---TCCCACATGTCGTA 10520186 Query 204400 CTGAAAGATGCCTTGACTGACTGGGCTGCCCTTGTACGTCGGATA-AGGCTGATCCTCTT 204458 ||| | |||||| | ||||| || ||||| ||||||| || ||| || |||| Sbjct 10520187 CTGGAGGATGCCCTTGCTGACGGGCGAGCCCTCGTACGTCTCGTAGGGGCCGA-GCTCTG 10520245 Query 204459 CTGCCAGCTTGCACGAGGCGGCCATGGCGTGATAGTACATGGTCTCAAAGATCTGAACGT 204518 | || |||| ||| ||| ||| |||| | ||| |||||||| || ||||| | || Sbjct 10520246 CGGCGAGCTCGCAGCTGGCCTCCAGGGCGGCGTGGTAGATGGTCTCGAACATCTGGATGT 10520305 Query 204519 T 204519 | Sbjct 10520306 T 10520306 Score = 96.9 bits (106), Expect = 6e-15 Identities = 114/152 (75%), Gaps = 2/152 (1%) Strand=Plus/Plus Query 203910 CCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTGGGGTCGGCCATGT 203969 ||| || ||| ||| | | ||||||| | |||||| | ||| || || || |||| Sbjct 10519619 CCTGCTTCCAGCCGAAGAAGTGCATGCTGGTCAGTTTTCCGTAGTTTGGCTCAGCGATGT 10519678 Query 203970 GAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGATCTGCGGCCATATTGATA 204028 | |||||||| |||||||| ||||||||| ||||| || || ||||| ||||| || | Sbjct 10519679 GGATGTTCAGCGACTGGCTCTGGTCGATG-AAGGCTCCACGGTCTGCCGCCATCTTCAGC 10519737 Query 204029 ATGGTCTTCTGCGAAATCTCCCACACCGTCTT 204060 | ||||||||| || || ||||| || || || Sbjct 10519738 ACGGTCTTCTGGGAGATTTCCCAAACGGTTTT 10519769 >seq17 Length=30456855 Score = 86.0 bits (94), Expect = 1e-11 Identities = 88/114 (77%), Gaps = 1/114 (1%) Strand=Plus/Plus Query 200179 AATTTTGTT-TACAGACTGGTTCCGGAGTACATGGACCCTGCAGGATGACCCTTGTAAAA 200237 ||| || || |||||| |||||| | | || ||||| ||||| |||||||| || |||| Sbjct 15913209 AATATTATTCTACAGAGTGGTTCAGAACCACCTGGACTCTGCAAGATGACCCCTGCAAAA 15913268 Query 200238 AATATCACGAAGTGCTCATTATCAACCCCGTTCTATTAGTCCCTCCAACCAAGG 200291 |||| | ||||| ||||| | |||||| | || | || ||||||||||||| Sbjct 15913269 AATACTATGAAGTCCTCATGGTTAACCCCCTCCTGCTGGTGCCTCCAACCAAGG 15913322 >seq13 Length=27080333 Score = 84.2 bits (92), Expect = 3e-11 Identities = 109/148 (74%), Gaps = 2/148 (1%) Strand=Plus/Plus Query 203914 CTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTGGGGTCGGCCATGTGAAT 203973 || ||| || || | ||||||| | ||||||| ||| || || || |||||||| Sbjct 15275868 CTTCCATCCATAAAAGTGCATGCTGGTGAGTTTGCCGTAGTTTGGCTCAGCAATGTGAAT 15275927 Query 203974 GTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGATCTGCGGCCATATTGATAATGG 204032 ||||||||||| || || |||||| ||| ||| |||||||| ||||| |||| | | Sbjct 15275928 ATTCAGAGACTGACTCTGATCGATG-TAGGTGCCACGATCTGCTGCCATCTTGAGGACAG 15275986 Query 204033 TCTTCTGCGAAATCTCCCACACCGTCTT 204060 | ||||| || || ||||| || || || Sbjct 15275987 TTTTCTGGGAGATTTCCCAAACTGTTTT 15276014 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795154951514000