Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20hellerii_20[genbank_20GCA_5F001443345.1_202015-11-13] 25 sequences; 733,802,474 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq13 143 3e-29 seq18 129 7e-25 >seq13 Length=27080333 Score = 143 bits (158), Expect = 3e-29 Identities = 151/199 (76%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||||||||||||||| || ||||| | || || |||||||| ||||| || Sbjct 11062566 CTCCTTCTGGATATTGTAGTCGGACAGGGTGCGGCCATCTTCCAGCTGCTTTCCGGCAAA 11062625 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 |||| | ||||||||| | || | || |||||| ||| |||||| ||| | | Sbjct 11062626 GATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGGATCTTGGCCTTAACGTT 11062685 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | | || || || | ||||| |||| |||||||||||||| || || ||||| || Sbjct 11062686 CTCAATGGTATCACTGGGCTCCACCTCCAGGGTGATGGTTTTGCCGGTGAGGGTTTTCAC 11062745 Query 46582 AAAGATTTGCATTTTGCAC 46600 |||||| ||||| |||||| Sbjct 11062746 AAAGATCTGCATCTTGCAC 11062764 Score = 138 bits (152), Expect = 1e-27 Identities = 145/191 (76%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 || || ||||| ||||||||||| || ||||| | || || ||||| ||||| || || Sbjct 11060556 TCTTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCCAGCTGTTTGCCAGCAAAG 11060615 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 |||| | ||||||||| | || | || |||||| ||| |||||| ||||| || Sbjct 11060616 ATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGGATCTTGGCCTTGACGTTC 11060675 Query 46523 GCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACA 46582 | | |||||||| | |||||| |||| |||||||||||||| || || || || ||| Sbjct 11060676 TCAATGGTGTCGCTGGGTTCCACCTCCAGGGTGATGGTTTTGCCGGTGAGGGTCTTGACA 11060735 Query 46583 AAGATTTGCAT 46593 ||||||||||| Sbjct 11060736 AAGATTTGCAT 11060746 >seq18 Length=80077792 Score = 129 bits (142), Expect = 7e-25 Identities = 169/234 (72%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 46360 TTATTTGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTA 46419 ||| | ||| || || | ||| | ||||| || | || |||||| ||||||||||| Sbjct 51870039 TTACTGGCCACCCCTCAGACGGAGGACCAGGTGGAGGGTGGACTCCTTCTGGATATTGTA 51870098 Query 46420 GTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTC 46479 |||||| || ||||| | || || ||||||||||| || || |||| | ||||||||| Sbjct 51870099 GTCGGACAGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTC 51870158 Query 46480 GGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGA 46539 | || | || |||||| ||| || ||| ||||| || | | ||||| || | Sbjct 51870159 AGGGGGGATGCCCTCCTTATCCTGGAGCTTGGCCTTGACGTTCTCAATGGTGTCACTGGG 51870218 Query 46540 TTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || || |||| |||||||||||||| || || || || || ||||| ||||| Sbjct 51870219 CTCAACCTCCAGGGTGATGGTTTTGCCAGTGAGGGTCTTGACGAAGATCTGCAT 51870272 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565238223363000