Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20hellerii_20[genbank_20GCA_5F001443345.1_202015-11-13] 25 sequences; 733,802,474 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq13 138 1e-27 seq18 129 6e-25 seq22 123 2e-23 seq16 123 2e-23 seq20 87.8 2e-12 >seq13 Length=27080333 Score = 138 bits (152), Expect = 1e-27 Identities = 170/230 (74%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| || || || || ||||| ||||||||||||||| | || || || ||| | Sbjct 11060746 ATGCAAATCTTTGTCAAGACCCTCACCGGCAAAACCATCACCCTGGAGGTGGAACCCAGC 11060687 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || | || |||| || || ||||| || ||| | ||||| Sbjct 11060686 GACACCATTGAGAACG-TCAAGGCCAAGATCCAGGATAAGGAGGGCATCCCCCCTGACCA 11060628 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| |||| || | || |||||||||||||| || | |||||||| ||||||||| Sbjct 11060627 GCAGAGGCTGATCTTTGCTGGCAAACAGCTGGAAGATGGCCGCACCCTGTCCGACTACAA 11060568 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGCC 38472 |||||| || ||| | || || || | || || ||| |||| || |||| Sbjct 11060567 CATCCAGAAAGAATCCACCCTCCACCTTGTTCTCCGTCTGAGGGGTGGCC 11060518 Score = 114 bits (126), Expect = 1e-20 Identities = 144/195 (74%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 || ||||| || || || ||||| ||||| ||||||||||||||| | || || ||| || Sbjct 11062760 AAGATGCAGATCTTTGTGAAAACCCTCACCGGCAAAACCATCACCCTGGAGGTGGAGCCC 11062701 Query 38301 ACCGACAGC-GTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGA 38359 | || | | || |||| |||| | || |||| || || ||||| || ||| | || Sbjct 11062700 AGTGATACCATTGAGAACG-TTAAGGCCAAGATCCAGGATAAGGAGGGCATCCCCCCTGA 11062642 Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419 ||| ||| |||| || | || || || |||||||| || | |||||||| |||||| Sbjct 11062641 CCAGCAGAGGCTGATCTTTGCCGGAAAGCAGCTGGAAGATGGCCGCACCCTGTCCGACTA 11062582 Query 38420 CAACATCCAAAAGGA 38434 ||| ||||| ||||| Sbjct 11062581 CAATATCCAGAAGGA 11062567 >seq18 Length=80077792 Score = 129 bits (142), Expect = 6e-25 Identities = 168/230 (73%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || ||||| ||||||||||||||| | || || ||| ||| Sbjct 51870272 ATGCAGATCTTCGTCAAGACCCTCACTGGCAAAACCATCACCCTGGAGGTTGAGCCCAGT 51870213 Query 38304 GACAGC-GTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | || |||| | || | || ||| || || ||||| || ||| | ||||| Sbjct 51870212 GACACCATTGAGAACG-TCAAGGCCAAGCTCCAGGATAAGGAGGGCATCCCCCCTGACCA 51870154 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| |||| || | || ||||| |||||||| || | |||||||| ||||||||| Sbjct 51870153 GCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAGGATGGCCGCACCCTGTCCGACTACAA 51870094 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGCC 38472 ||||| ||||| | || || || |||| || ||| |||| || |||| Sbjct 51870093 TATCCAGAAGGAGTCCACCCTCCACCTGGTCCTCCGTCTGAGGGGTGGCC 51870044 >seq22 Length=23629796 Score = 123 bits (136), Expect = 2e-23 Identities = 100/121 (83%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 133279 ACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATG 133338 ||||| || ||||||||||||||||||||||||||||| ||||||| |||||| |||| Sbjct 3940387 ACCAGGTTCTCGTTGACGATGCCGTCGCTGGCGGCGAAGAAGGCCAACACGTGGGAGATG 3940328 Query 133339 AAATGGCGCTCGTTGTCGTTCAAGCGCTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACC 133398 || | |||||| | ||| |||| | |||||||| || ||| ||||||||||||||| Sbjct 3940327 AAGTAGCGCTCCTCGTCCTTCAGGGACTCCCAGTGCTGCAGGTCTTTGGACAGGTCCACC 3940268 Query 133399 T 133399 | Sbjct 3940267 T 3940267 Score = 96.9 bits (106), Expect = 3e-15 Identities = 97/126 (77%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 132917 CCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTT 132976 ||||||| | | ||||| ||||||||||| |||| ||||||||| ||||| | || | Sbjct 3940981 CCTCGTCTCGGCTGATGAGCTCGTTGCTGAAGGTCAGGCCGGGCATCAGGCCTCTCTTCT 3940922 Query 132977 TGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAG 133036 | ||||| || |||| |||||| || || ||||||| ||||| || || ||||| | Sbjct 3940921 TCAGCCAGAAGATGGAGGCGAACGAACCAGAGAAGAAGATTCCCTCCACAGCGGCGAAGG 3940862 Query 133037 CCACCA 133042 |||||| Sbjct 3940861 CCACCA 3940856 Score = 89.7 bits (98), Expect = 5e-13 Identities = 91/117 (78%), Gaps = 4/117 (3%) Strand=Plus/Minus Query 133167 GTAGGTGTCGATGAG--GGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGA 133224 |||||||||||| || || | ||||| || ||||| | ||||||||||||||| || Sbjct 3940581 GTAGGTGTCGATCAGCAGGCTG--TACATCTCAGAGTGGATGTTCTCCATGGCGATCTGG 3940524 Query 133225 AAGCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACC 133281 |||||||| || |||| ||||| ||||||||| || || | ||| ||||| ||| Sbjct 3940523 AAGCCGTAGAAACACCTGGCCTCCGTCACCTGCACCTCCTGCGTGAAGCGCTCCACC 3940467 >seq16 Length=24388307 Score = 123 bits (136), Expect = 2e-23 Identities = 170/235 (72%), Gaps = 2/235 (1%) Strand=Plus/Plus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 || ||||| || ||||| ||||| ||||| || || ||||||||| | || || ||| || Sbjct 2613043 AAGATGCAGATTTTCGTGAAAACCCTCACTGGGAAGACCATCACCCTGGAGGTGGAGCCC 2613102 Query 38301 ACCGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGA 38359 | || | | | | |||| | || | ||| || | || ||||| || ||||| | || Sbjct 2613103 AGTGATACCATTGAGAACG-TGAAGGCAAAGATTCAGGATAAAGAAGGCATTCCTCCTGA 2613161 Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419 ||| ||| |||| || | || |||||||||||||| || | |||||||| ||||| Sbjct 2613162 CCAGCAGAGGCTGATCTTTGCTGGCAAACAGCTGGAAGATGGCCGCACCCTGTCGGACTA 2613221 Query 38420 CAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGCCGC 38474 |||| |||| ||||| | || || || ||||||| || |||| || || ||| Sbjct 2613222 CAACGTCCAGAAGGAGTCCACCCTCCACCTGGTGCTCCGCCTGAGGGGAGGACGC 2613276 >seq20 Length=26302745 Score = 87.8 bits (96), Expect = 2e-12 Identities = 101/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 132917 CCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTT 132976 |||| |||||| ||||||||||||| | | || | ||| ||||||||||| | || | Sbjct 12394070 CCTCATCCCTGCTAATGAGTTCGTTGGAGTAGGTAAGGCCTGGCATGAGGCCTCTCTTCT 12394129 Query 132977 TGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAG 133036 | ||||| | || || ||||| ||| || ||||| | ||||| || || || |||| Sbjct 12394130 TCAGCCAGTAGATAGCAGCGAATGAGCCTGAGAAGAAAATCCCCTCCACTGCTGCAAAAG 12394189 Query 133037 CCACCAGGCGCTCGCC 133052 |||| || ||||| || Sbjct 12394190 CCACAAGACGCTCCCC 12394205 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500172643696000