Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20hellerii_20[genbank_20GCA_5F001443345.1_202015-11-13] 25 sequences; 733,802,474 total letters Query= NC_014458.1 Length=59598 Score E Sequences producing significant alignments: (Bits) Value seq18 156 2e-33 >seq18 Length=80077792 Score = 156 bits (172), Expect = 2e-33 Identities = 226/317 (71%), Gaps = 4/317 (1%) Strand=Plus/Minus Query 53670 TGTCTCACTCCCCGAAGTGGCGGGAGCAGCTCGGCACGCTGGGCGGCGGCAATCACTTCA 53729 |||| || || ||||||||||| ||||| | || || |||| || || || || |||| Sbjct 70158310 TGTCGCATTCGCCGAAGTGGCGTCAGCAGTTAGGTTCGTTGGGTGGTGGTAACCATTTCA 70158251 Query 53730 TCGAGCTGTGCCTCGACCACCTCGACCGCGTGTGGTTGTTCCTGCACTCCGGTTCGCGTG 53789 | || |||| | ||| | | |||||||||||| ||||||||||||||||||| || | Sbjct 70158250 TTGAATTGTGTTTGGACGAGCAGGACCGCGTGTGGATGTTCCTGCACTCCGGTTCCCGCG 70158191 Query 53790 GCGTCGGTAACAAGATCGCGCAGAAGCACATTCAGGCCGCGCAGGGCTATTGCCTCGCCA 53849 | || || |||||||| || ||||||||||| || || || || || | || Sbjct 70158190 GTGTGGGCAACAAGATTGCAAAGAAGCACATTAAGATTGCCCA--GCGTCTGTGTGAGCA 70158133 Query 53850 ATG--GGCTGCACGTGCCACACAAGGATCTGGCGTACCTCGTCGAGGGCACGGTCGAGTT 53907 || || | | | |||| |||||||| |||||||| | || |||| || ||||| Sbjct 70158132 GTGGTGGATTCCCCTGCCCAACAAGGATTTGGCGTACTTGGTGCAGGGGACCCCAGAGTT 70158073 Query 53908 CGACCGCTACCTCGTTGAATTACGTTGGGCGCAGCGGTTTGCGTACTACAACCGCGCCGA 53967 | | || || || || ||||||||||||||||| | | |||||| | || Sbjct 70158072 CAAGGCTTATCTGCAGGATTTGAAGTGGGCGCAGCGGTTTGCCTTCCTCAACCGTGAGGA 70158013 Query 53968 AATGATGGACCGATTCG 53984 |||||||||||| |||| Sbjct 70158012 AATGATGGACCGTTTCG 70157996 Score = 91.5 bits (100), Expect = 6e-14 Identities = 68/80 (85%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 988 GCGCCTGGGTGTGTAGCTCAATTGGCAGAGCAGCGGTCTCCAAAGCCGCCGGTTGCACGT 1047 |||| | || | |||||||||||||||||||||||||||||||| |||| ||||||| || Sbjct 68267899 GCGCATAGGGGCGTAGCTCAATTGGCAGAGCAGCGGTCTCCAAAACCGCAGGTTGCAGGT 68267958 Query 1048 TCGAGTCGTGCCGCGCCCGC 1067 || |||| || ||| || || Sbjct 68267959 TCAAGTCCTGTCGCCCCTGC 68267978 Score = 87.8 bits (96), Expect = 7e-13 Identities = 145/207 (70%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 53318 ACGCTTGCGCAGGCGCAGCAGATCGCCGATCTGCCTTTCGTTTATCCGCATGTGGCGCTG 53377 ||||||| ||| || |||||| | || | ||||| || |||| |||||||| ||||| Sbjct 74070646 ACGCTTGAGCAAGCCCAGCAGCTGGCAAAACTGCCGTTTATTTACCCGCATGTTGCGCTC 74070705 Query 53378 ATGCCTGATGCGCATTTCGG-TAAGGGCAGCAGTGTCGGCACGGTGATCCCGACCGAGGG 53436 ||||| || || || ||| | |||| | | || || || ||| || ||| | Sbjct 74070706 ATGCCCGACGCCCACACCGGGTTAGGGTCGTCG-GTGGGAACCGTGTTCGGCACCATTGA 74070764 Query 53437 CGCTGTGATCCCGGCGGCCGTCGGCGTCGATATTGGCTGCGGCATGATCGCAGCCCGCAC 53496 || ||||| || || ||||| ||||| || || || ||||||||||| || | || || Sbjct 74070765 TGCCGTGATTCCCGCCGCCGTGGGCGTTGACATCGGATGCGGCATGATTGCCGTGCGTAC 74070824 Query 53497 CACGTACACGGCGAACGATCTTGAGGG 53523 | | |||||| | |||| | | ||| Sbjct 74070825 CCAATTCACGGCCACCGATTTGGCGGG 74070851 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 190591943418000