Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20hellerii_20[genbank_20GCA_5F001443345.1_202015-11-13] 25 sequences; 733,802,474 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq1 221 9e-52 seq10 91.5 1e-12 >seq1 Length=30011118 Score = 221 bits (244), Expect = 9e-52 Identities = 936/1469 (64%), Gaps = 16/1469 (1%) Strand=Plus/Minus Query 517249 TTTATCAGCGGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAAT 517308 ||| || |||||| |||||| || || || ||||| || | |||||| || ||||| || Sbjct 12115098 TTTGTCGACGGCAGACACATTTAGGATGCCGTTGGCGTCGATATCAAAGGTAACTTCGAT 12115039 Query 517309 TTGAGGGACCCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATT 517368 || || || ||||| ||||||| || | || | | ||| | ||||| ||| Sbjct 12115038 CTGTGGCACGCCTCTGGGAGCAGGAGGAAGACCAGAGAGCTCAAACTTCCCCAGGAGATT 12114979 Query 517369 ATTATCTTTAGTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATT 517428 || || || || | || ||||| || | | || || ||| | | || || Sbjct 12114978 GTTGTCCTTTGTCATGGCTCTCTCACCTTCATAGACCTGAATCAGGACTCCTGGCTGGTT 12114919 Query 517429 ATCTGAATAAGTTGTAAATACTCTGGATTTT-TTACAAGGAATTGTTGTGTTTCTATCAA 517487 |||||| || || | || | |||| | | || || || || ||||||| | | Sbjct 12114918 ATCTGAGTATGTGGAGAAGA-TCTGAGTCTGCTTTGTGGGGATGGTGGTGTTTCGCTTGA 12114860 Query 517488 TAATATTGGTCATAATACCACCTGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAA 517547 ||| | ||||||| ||||| ||||| || | || || || | || | ||||| | Sbjct 12114859 TAAGAGGTGTCATAACGCCACCGGCTGTCTCAATGCCCAGCGACAAGGGTGCCACATCCA 12114800 Query 517548 CTAGGACAATATTTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAG 517607 || | | || ||| | ||||| || | ||| | || ||||| || || | | Sbjct 12114799 GGAGCAGTAAATCTTGGACATTTTCTGAGGTGTCACCCATGAGGATAGCAGCCTGGACTG 12114740 Query 517608 CAGCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGA 517667 | |||||||| || || ||||||||||| || | | | ||||||| | ||||||||| Sbjct 12114739 CTGCACCATAGGCCACCGCTTCATCAGGGTTGATGCTCTTGTTTAGTTCTCTACCATTGA 12114680 Query 517668 AAAAATTTGAAAGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATACAA 517727 | || | || || | | | || || || | | || || ||||||| |||| Sbjct 12114679 AGAAGTCCTGCAGGAGCTTTTGGATTTTGGGGATTCTTGTAGAGCCACCAACTAGGACAA 12114620 Query 517728 TTTCATGCACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAA 517787 ||| || | || ||||||||||| || | ||| || | || ||||| || || | Sbjct 12114619 CTTCGTGGATCTTGGATTTATCCAGCTTAGCATCTTGTAGGGCCTTCTCAACTGGCTCCA 12114560 Query 517788 GACCCGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACAT 517847 | | ||||| | |||||| || || ||||| || || || || ||| | Sbjct 12114559 GTGTTCCCCTAAAGAGGTCTGAGTTGAGCTCCTCGAAGCGTGCCCTTGT--GATTGAGGT 12114502 Query 517848 -TATAA-TCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGA 517905 || || ||||| || || || | || |||| ||||| | | ||||| || || Sbjct 12114501 GTAAAAGTCAATGCCCTCAAAGAGTGAGTCAATCTCAATGCTTGCCTGAGTGCTGGAGGA 12114442 Query 517906 TAGTGCACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTT----TGCTG 517961 | | | || || | ||||| ||||| | ||||| | | ||| | | ||| Sbjct 12114441 CAAGGTCCTCTTTGCTCTCTCACAAGCTGTGCGCAGTCTCCTCACTGCTCTCTTGTTCTG 12114382 Query 517962 ATTGATTCAAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGAC 518021 |||| || | || | ||||| || || || || ||| | | || | | Sbjct 12114381 GCTGATG----TCCTTCTTGTGCTTTCTTTTAAACTCCTCCACAAAGTGGCTGACCATTC 12114326 Query 518022 GATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAA 518081 | || |||||||| || || || | | || | || | || | | | || | || | Sbjct 12114325 GGTTGTCAAAATCCTCTCCGCCGAGGTGTGTGTCCCCGGCTGTGGATTTCACCTCAAATA 12114266 Query 518082 GTCCATCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAA 518141 ||||| |||| | || | | || ||| || || ||||| | |||||| || | Sbjct 12114265 TGCCATCCTCAATGGTCAGGATGGACACGTCAAAAGTGCCTCCACCAAGATCAAAGATGA 12114206 Query 518142 GTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTG 518201 | || || ||| || | ||||||||| || || |||| || ||||| || | Sbjct 12114205 GGACGTTGCGCTCTCCTCTTTTGCCTTTATCAAGGCCGTAGGCAATGGCTGCAGCTGTCG 12114146 Query 518202 GTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTT 518261 | ||||| || || | | |||||| || || | || ||| ||||| || ||||||| Sbjct 12114145 GCTCATTTATGATGCGGAGAACATTTAGTCCGGAGATCACTCCAGCATCCTTTGTGGCTT 12114086 Query 518262 GTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCAGTTACT-TCTTTA 518320 | ||||| ||||| ||||| || || || || || || || |||| | || ||| | Sbjct 12114085 GCCTTTGGGAATCATTAAAGTAAGCTGGCACTGTGATGACCGCATTCGACACCCTCTGTC 12114026 Query 518321 CCAATATAAGCGCTTGCCGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCT 518380 ||| | | || || ||| | |||||||| | | ||| || ||||| | ||| Sbjct 12114025 CCAGAA-AGGCCTCAGCTATTTCTCTCATTTTAACCAGGACCATCGAGGAAATCTCTTCA 12113967 Query 518381 GGGGAATATTGCTTGGATTCATTTTGATATGATACTTCAAAATATGGTTTATTACCAACA 518440 || | || ||| ||| || |||| || | | | || || | Sbjct 12113966 GGACAGAATGTCTTAATTTCTCCTTTATATTCCACCTGGACTTTGGGCTTTCCGTTGTCG 12113907 Query 518441 TTAATAACTTTAAATGGCCAGTATTTCATATCTGATTGAACACTTTGGTCATTAAAATCT 518500 || || || || || |||||| |||||| || || || || |||||| ||| | Sbjct 12113906 TTGATCACCTTGAACGGCCAGAGTTTCATGTCAGACTGGACCACCAGGTCATCAAACCTT 12113847 Query 518501 CTACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATAT 518560 || ||||| | ||||| |||||||| || || ||||| || || || ||| |||| | Sbjct 12113846 CTTCCAATGAGCCGTTTGGCATCAAAGATCGTGTTGGTGGGGTTCATGGCAACTTGGTTC 12113787 Query 518561 TTGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTG 518620 ||||| |||||||| || || ||||| || ||||| | || || |||||||| Sbjct 12113786 TTGGCAGCATCTCCGATGAGCCTCTCTGTGTCGGTAAAGGCCACGTAGCTGGGAGTTGTC 12113727 Query 518621 CGATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACAA 518680 | || ||||||||||| || |||||||| ||||| |||| || | || || |||||| Sbjct 12113726 CTGTTGCCTTGATCATTGGCGATAATTTCCACTTTTCCATGCTGGAAGACCCCGACACAA 12113667 Query 518681 CTAAAAGTTGTTCCTAAATCAATACCAAT 518709 | || || || | ||| || ||||| Sbjct 12113666 GAGTAGGTGGTGCCCAGATCGATGCCAAT 12113638 >seq10 Length=29643077 Score = 91.5 bits (100), Expect = 1e-12 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 517264 CACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCT 517323 |||||| ||||| || |||||||| | ||||| || ||||| || |||||||| ||||| Sbjct 16871391 CACATTGAGAATGCCGTTGGCATCAATGTCAAAGGTCACTTCGATCTGAGGGACTCCTCT 16871450 Query 517324 CTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAA 517383 ||||||| || || || ||| | |||| | |||| ||||||||||||| || | Sbjct 16871451 GGGAGCAGGCGGAATACCAGTCAATTCAAATTTCCCCAAGATATTATTATCTTTGGTCAT 16871510 Query 517384 TTTTCGTTCACCCTCGAAAA 517403 || ||| || ||| ||| Sbjct 16871511 GGCTCTTTCCCCTTCGTAAA 16871530 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3780821159417650