Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20hellerii_20[genbank_20GCA_5F001443345.1_202015-11-13] 25 sequences; 733,802,474 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq22 82.4 9e-11 seq18 82.4 9e-11 >seq22 Length=23629796 Score = 82.4 bits (90), Expect = 9e-11 Identities = 84/110 (76%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 102203 TGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGG 102262 ||| ||||| ||||||||||||||||| ||| | | || | ||||| |||||| |||| Sbjct 3940872 TGTGGAGGGAATCTTCTTCTCTGGTTCGTTCGCCTCCATCTTCTGGCTGAAGAAGAGAGG 3940931 Query 102263 TCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGG 102312 || ||||| || || |||| ||||||||| ||| || ||||||| Sbjct 3940932 CCTGATGCCCGGCCTGACCTTCAGCAACGAGCTCATCAGCCGAGACGAGG 3940981 >seq18 Length=80077792 Score = 82.4 bits (90), Expect = 9e-11 Identities = 163/237 (69%), Gaps = 6/237 (3%) Strand=Plus/Plus Query 15864 GGGAGAGCTACTTGGATCTTACGATCAAAGCGACCTGGGCGAAGGAGCGCGTCATCAAGG 15923 ||| || | ||| || || | |||||| || ||||| || || || || ||| || Sbjct 51266024 GGGCGACCAACTAAGACTTTTCTATCAAAACGTCCTGGACGGAGAAGAGCTGGATCTAGA 51266083 Query 15924 ATATCAACGCGATTCGTTGCGGCGATGACAACAATACCTG--TTTCGTTATCAAAACCAT 15981 | ||| || ||||| || ||||| || | || ||| |||| | ||||||||| Sbjct 51266084 ACATCTGAACGGTTCGTCGCAGCGATAACGATGATCCCTTCATTTCCCT--CAAAACCAT 51266141 Query 15982 CCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCT-GGCATACCA 16040 |||| || |||| || ||||| | |||||||| ||||||||||| || | || Sbjct 51266142 CCATTTCAATCAAGAGTTGGTTCAAGGTTTGTTCACGTTCATCATTTCCTCCACCTA-GG 51266200 Query 16041 CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCATGGT 16097 ||| ||| ||||| || || ||||| || ||||| || |||| |||| |||| Sbjct 51266201 CCAACACCACGTTGGCGACCAACAGCATCTATTTCATCGATAAAGATGATGGCTGGT 51266257 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620742206018000