Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20hellerii_20[genbank_20GCA_5F001443345.1_202015-11-13] 25 sequences; 733,802,474 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq25 102 1e-16 seq12 96.9 4e-15 seq21 93.3 5e-14 seq19 93.3 5e-14 seq14 93.3 5e-14 seq9 93.3 5e-14 seq15 89.7 6e-13 >seq25 Length=32766887 Score = 102 bits (112), Expect = 1e-16 Identities = 262/392 (67%), Gaps = 8/392 (2%) Strand=Plus/Plus Query 110270 TGACATATTTGGGGAGAGCAATAGACGCAAGATTGCACACAGAAGTCTCGTCTTTGTCGG 110329 |||| || || ||| || || || || || ||||| || | |||||| ||| || Sbjct 10520522 TGACGTACATGTTGAGGGCGATGGAGGCCAGGTTGCAGACGGCCACCTCGTCCTTGCTGG 10520581 Query 110330 TGTATTCCAAAATTTCCGTACACAAGTTGGAACTCTTAATGACACCCAAGTTCTTCTGAT 110389 |||| |||| | ||||| || | |||| | ||| ||| |||| ||||| ||| | Sbjct 10520582 TGTACTCCACCACCTCCGTGCAGAGGTTGCTGCACTTGATGGTGCCCAGGTTCTGCTGGT 10520641 Query 110390 TCGATTTGGAGTTGCATGCATCCTTATAGAGCATGTATGGGGTACCAGTTTCCGTCTGTG 110449 | || |||||| || ||||| ||||||||||| ||||| || ||||| ||||| | Sbjct 10520642 TGCTCTTCCTGTTGCAAGCGTCCTTGTAGAGCATGTAGGGGGTCCCGGTTTCGGTCTGGG 10520701 Query 110450 ACTTGAGAATGGCCTTCCATACATCGGCGGCGGGGACAGTTGC--GTTAGCGAGACCTTC 110507 ||| || ||||| | || | | | || ||| || | || | ||||| Sbjct 10520702 ACTCGATGATGGCGTACC--AGAGCTGCTGCGCCTTCACCACCCTTTTCACTCTCCCTTC 10520759 Query 110508 CTCCTCGTACTTGGTGTACAAGTCCTCAAATTCCTGTCCGTA-CACATCAGAAAGACCCT 110566 || ||| || |||||||| | | ||| || |||| ||| | ||| || || || Sbjct 10520760 CTTCTCATATTTGGTGTAGAGCTTCTCGAACTCCTCTCCCCAGCAC-TCGTCCAGCCCAG 10520818 Query 110567 TCGCCTTGTCGGGACAGAAGAGGGACCAAT-TTCCACCCTCCTCAACCCTCTTCATGAAC 110625 || | |||||| | | |||||| | | || ||| || |||||||||||| Sbjct 10520819 GACACTCGCTGGGACACATCAAGGACCAGTCCTGGTTGCT-CTCCACTCTCTTCATGAAC 10520877 Query 110626 AGGTCAGGAATCCACATCGCCGAGAAAAGGTC 110657 |||||||| ||||||| || |||||||||| Sbjct 10520878 AGGTCAGGGATCCACAAGGCGTAGAAAAGGTC 10520909 >seq12 Length=31653010 Score = 96.9 bits (106), Expect = 4e-15 Identities = 65/73 (89%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGTT 136776 ||||||||||||||||||||||||||| |||||||||||||| ||||||||| |||||| Sbjct 17227743 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGGGTTCGATCCCCGTA 17227802 Query 136777 GGGAACAGCTTTT 136789 || |||| ||| Sbjct 17227803 CGGGCCAGCCTTT 17227815 Score = 93.3 bits (102), Expect = 5e-14 Identities = 56/59 (95%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGT 136775 ||||||||||||||||||||||||||| |||||||||||||| ||||||||| |||||| Sbjct 14819174 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGGGTTCGATCCCCGT 14819232 >seq21 Length=24065024 Score = 93.3 bits (102), Expect = 5e-14 Identities = 56/59 (95%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGT 136775 ||||||||||||||||||||||||||| |||||||||||||| ||||||||| |||||| Sbjct 16149306 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGGGTTCGATCCCCGT 16149364 >seq19 Length=33316517 Score = 93.3 bits (102), Expect = 5e-14 Identities = 56/59 (95%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGT 136775 ||||||||||||||||||||||||||| |||||||||||||| ||||||||| |||||| Sbjct 13055695 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGGGTTCGATCCCCGT 13055753 >seq14 Length=29974747 Score = 93.3 bits (102), Expect = 5e-14 Identities = 56/59 (95%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGT 136775 ||||||||||||||||||||||||||| |||||||||||||| ||||||||| |||||| Sbjct 15162222 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGGGTTCGATCCCCGT 15162280 >seq9 Length=12726346 Score = 93.3 bits (102), Expect = 5e-14 Identities = 56/59 (95%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGT 136775 ||||||||||||||||||||||||||| |||||||||||||| ||||||||| |||||| Sbjct 2447875 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGGGTTCGATCCCCGT 2447933 >seq15 Length=28249122 Score = 89.7 bits (98), Expect = 6e-13 Identities = 55/59 (93%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGT 136775 |||||||| |||||||||||||||||| |||||||||||||| ||||||||| |||||| Sbjct 27846389 TAGCTCAGCTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGGGTTCGATCCCCGT 27846331 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588975815945000