Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20hellerii_20[genbank_20GCA_5F001443345.1_202015-11-13] 25 sequences; 733,802,474 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq25 141 1e-28 seq13 100 3e-16 seq20 96.9 4e-15 seq18 93.3 5e-14 >seq25 Length=32766887 Score = 141 bits (156), Expect = 1e-28 Identities = 951/1502 (63%), Gaps = 62/1502 (4%) Strand=Plus/Plus Query 105841 CTTCATATCCTTGGACCAAAGACCAATCTTCTTGAGATCATTGACGAGATGCTTGTTGAC 105900 |||||| |||| | ||| || || || | | ||||| |||| ||| || |||||| Sbjct 10519920 CTTCATCTCCTCGTTCCACAGGCCGCGCTCCGTCAGATCCTTGAGGAGGTGAGGGTTGAC 10519979 Query 105901 AATCACAAACTCTCCCGCGAGGGTTCTTCTCAGATAGATGTTCGTCGTGTAGGGTTCAAA 105960 ||| |||||||| | || || | |||||||| | ||||| | || | Sbjct 10519980 GATCTGGAACTCTCCGGACAGCACCCTGCGGGTGTAGATGTTGCTGGTGTACGCCTCGAT 10520039 Query 105961 GCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGTGCCATCAAAAG 106020 | | || || || |||| ||| || |||||||| || || ||||| || |||| || || Sbjct 10520040 GGACTCGTTGTTGCCCAGGATCTGGGCGGTGGACGCCGTGGGCATGGGCGCCAGCAGCAG 10520099 Query 106021 ACTGTTACGAAGACCCTTTTCCTTGATGCGTTCCTTGAGAACATCCCAGTCGTAGTTGA- 106079 ||||| | | || | || ||| |||||| || | | |||||| | | Sbjct 10520100 GCTGTTCCTCACGCCGTGTTTGCCGATCTTTTCCTTCAGCAGCTTCCAGTCCCAAAGGTC 10520159 Query 106080 GCTTGGTTTCACCTTCCCACATATCAAATTGAAGCAC-CCCTTGG-GACGTGGGAGAACC 106137 | | || || || ||||||| || | || || | |||||| |||| | ||| || Sbjct 10520160 GGTCGGCGTCTTCT-CCCACATGTCGTACTGGAGGATGCCCTTGCTGACGGGCGAG--CC 10520216 Query 106138 CTCAAATGTCTCATAGGAACCTTGGGCTTCAGCCAATTCACAGCTCGCCTCCAGGGATGC 106197 ||| | ||||| |||| || | || | || | || ||||| |||||||||| || Sbjct 10520217 CTCGTACGTCTCGTAGGGGCCGAGCTCTGCGGCGAGCTCGCAGCTGGCCTCCAGGGCGGC 10520276 Query 106198 GTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTCATCTGAATCAAATGC 106257 ||| || ||||| || || || | || | | || ||||| || || | Sbjct 10520277 GTGGTAGATGGTCTCGAACATCTGGATGTTGAGCAGCTGAGCTTCGGGACTTTCGAAAGG 10520336 Query 106258 GTAGCGGCA-CAAAATAAATACATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGT 106316 || || ||| || || || | || || ||||| || || || | || || || |||| Sbjct 10520337 GT-GCCGCATCAGGATGAAGGCGTCGGCCAGACCCTGGACGCCGATCCCGATCGGCCTGT 10520395 Query 106317 GTCGCATATTAGACTTTCGCGCAGTCTC-AACGGGATAAAAATTTCTGTCAATGACTCGG 106375 | ||| | || || | | || || ||| || || | || |||| |||| | Sbjct 10520396 GGCGCTTGTTGGAAGT-CTCGGCTTCGGGAACCGGGTAGTAGTTGATGTCGATGATCTTG 10520454 Query 106376 TTTAGATTTTTGGTAACAATCTTTGTGATTTCATGAAGTTTTTCATAATCAAAAGTGCGA 106435 || || ||||| | | ||| |||| || || | | || ||||| || Sbjct 10520455 TTGAGGTTTTTCACGATTACCTTGGTGACGGAGGCCAGCTTCTTGAAGTCGAAAGTCCG- 10520513 Query 106436 GTCTCTTCATTGACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCA 106495 |||| |||| ||| | |||||||| || |||| ||||| || ||| ||| Sbjct 10520514 --CTCTGGCGTGACGTACATGTTGAGGGCGATGGAGGCCAGGTTGCAGACGGCCACCTCG 10520571 Query 106496 TCCTTATCTGTGTACTCTAAAATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAA 106555 ||||| |||||||| | | || || || | |||| | ||| || || |||| Sbjct 10520572 TCCTTGCTGGTGTACTCCACCACCTCCGTGCAGAGGTTGCTGCACTTGATGGTGCCCAGG 10520631 Query 106556 TTCTTTTGGTTACTCTTTTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTC 106615 |||| ||||| ||||| ||||||| || |||||||||||||||||||| ||||| || Sbjct 10520632 TTCTGCTGGTTGCTCTTCCTGTTGCAAGCGTCCTTGTAGAGCATGTAGGGGGTCCCGGTT 10520691 Query 106616 TCCGTCTGTGACTTGAGAATTGCCTTCCACA-CATCGGCGGCTGGTACAATGGCGTTGGC 106674 || ||||| |||| || || || | ||| | | | ||| || || | || | Sbjct 10520692 TCGGTCTGGGACTCGATGATGGCGTACCAGAGCTGCTGCGCCT-TCACCACCCTTTTCAC 10520750 Query 106675 CCGTCCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGC-GTCGG 106733 | || ||| ||| || || |||||||| || |||||||| ||| | || ||| Sbjct 10520751 TCTCCCTTCCTTCTCATATTTGGTGTAGAGCTTCTCGAACTCCTCTCCC-CAGCACTCGT 10520809 Query 106734 AGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCCT--CCTCAACCCG 106791 || || || || | ||||| | | ||||| | || | ||| || | Sbjct 10520810 CCAGCCCAGGACACTCGCTGGGACACATCAAGGACCA--GTCCTGGTTGCTCTCCACTCT 10520867 Query 106792 CTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTC 106851 ||||||||| ||||| || ||||||| || | || || ||||| | ||| || Sbjct 10520868 CTTCATGAACAGGTCAGGGATCCACAAGGCGTAGAAAAGGTCTCTGGCTCTCTGCTCCTC 10520927 Query 106852 GTCACCTTGGTTGAGTCGT-AACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAA 106910 | ||| ||| || | | ||| ||||| || | | || |||||||||||| | Sbjct 10520928 CTTTCCTGTGTT-CTTCTTCAGCTCCAGGAAGTCGAACACGTCGAAGTGCCATGGCTCCA 10520986 Query 106911 GATAGACTGCGA------TAGATCCCTT-TCGACGCCCAGCTTGATTTACATAGCGCGCT 106963 |||| | |||| | || ||| | | ||||| || | || || || || Sbjct 10520987 GATACATGGCGAAGGCCCCGGGTCTCTTGTTGCCGCCC----TGGTCAACGTACCGAGCG 10521042 Query 106964 GTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGACCATTTGTCCCCCGA 107023 ||| ||| | || | ||||| || | | || | || | || || || || Sbjct 10521043 GTGTTGTTGTAAACTCTCAGCATCGGCACCAACCCGTTGGAGTTGCCGTTGGTGCC---- 10521098 Query 107024 ATACGAGATTTATTGGCTCTCACATC-AT-GGATG---------TGCATCCCAATACCCC 107072 | ||| || ||| || | || || ||||| || || || || | Sbjct 10521099 ---TGCGATGTA---GCT-TCCCGTCGATCGGATGCAGCTCACCGCCACGCCGATCCCGC 10521151 Query 107073 CAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGT 107132 |||| |||| || || |||| |||| | | || || | ||||| || | ||| || Sbjct 10521152 CAGCGGACTTGGAAATGAGCGCGCACTGCTTCAGGGTGTCGTAGATGCCTTCGATGCTGT 10521211 Query 107133 CCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTC--TTGGTGTACCAGCATT 107190 | ||||| |||||| |||||||||||||||| |||||| | ||| || || || || Sbjct 10521212 CGTCCTTCATGGCGAGCAGGAAGCAACTGGACAGCTGCGGCCGGTTG--GTCCCGGCGTT 10521269 Query 107191 GAAGAGGGTTGGTGTTGCGTGAATGAACATACCT-TGGGACATCTTGTCGTATGTCTCCA 107249 ||||||||| || | ||||| ||||| || | | |||| || ||| ||||| | Sbjct 10521270 GAAGAGGGTCGGAGAGGCGTGGGTGAAC-CACTTCTCCGACAGGAGGTTGTAGGTCTCGA 10521328 Query 107250 AGACAGAATCAATGTCTTCCCCGTGGATGCCGATGGCCACACGCATAAACATGTATTGGG 107309 | | | || |||||| ||||||||| || | | ||| | ||| | ||||| || | Sbjct 10521329 CGGCGGCGTCGATGTCTCGCCCGTGGATCCCAACCGACACCCTCATGAGCATGTGCTGCG 10521388 Query 107310 GT 107311 || Sbjct 10521389 GT 10521390 >seq13 Length=27080333 Score = 100 bits (110), Expect = 3e-16 Identities = 114/153 (75%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 106492 CTCATCCTTATCTGTGTACTCTAAAATTTCTGTACACAAGTTGGAACTCTTAATCGTCCC 106551 |||||| ||| |||||| || | ||| ||||| || | ||| ||| || || || Sbjct 15278719 CTCATCTTTACTTGTGTATTCAACAATCTCTGTGCAGAGATTGCTGGACTTGATGGTGCC 15278778 Query 106552 CAAATTCTTTTGGTTACTCTTTTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCC 106611 || ||| | ||||| |||| ||||||| || ||||||||||||||||| ||||| || Sbjct 15278779 CAGATTTTGCTGGTTGGTCTTCCTGTTGCAGGCGTCCTTGTAGAGCATGTACGGCGTACC 15278838 Query 106612 CGTCTCCGTCTGTGACTTGAGAATTGCCTTCCA 106644 |||||| ||||| |||| || || || | ||| Sbjct 15278839 CGTCTCTGTCTGCGACTCGATGATGGCGTACCA 15278871 >seq20 Length=26302745 Score = 96.9 bits (106), Expect = 4e-15 Identities = 101/133 (76%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 117293 CCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACCCCGCTTCT 117352 ||||||| | | ||| ||||| || ||| || |||||||||||||| || | ||||| Sbjct 12394070 CCTCATCCCTGCTAATGAGTTCGTTGGAGTAGGTAAGGCCTGGCATGAGGCCTCTCTTCT 12394129 Query 117353 TCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACACGCAAACG 117412 ||| ||| || ||||| |||||| || |||||||| || |||||||| ||||| | Sbjct 12394130 TCAGCCAGTAGATAGCAGCGAATGAGCCTGAGAAGAAAATCCCCTCCACTGCTGCAAAAG 12394189 Query 117413 CAAAAAGGCGCTC 117425 | | ||| ||||| Sbjct 12394190 CCACAAGACGCTC 12394202 >seq18 Length=80077792 Score = 93.3 bits (102), Expect = 5e-14 Identities = 159/227 (70%), Gaps = 8/227 (4%) Strand=Plus/Plus Query 9171 GGGAGAGCTACTTGGATCTTACGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGG 9230 ||| || | ||| || || | |||||| || |||||||| || || || ||| || Sbjct 51266024 GGGCGACCAACTAAGACTTTTCTATCAAAACGTCCTGGACGGAGAAGAGCTGGATCTAGA 51266083 Query 9231 ATATCAACGCGATTCGTCGCGGCGATGACAACAATACCTGTTTCATTA---TCAAAACCA 9287 | ||| || |||||||| ||||| || | || ||| ||||| ||||||||| Sbjct 51266084 ACATCTGAACGGTTCGTCGCAGCGATAACGATGATCCCT---TCATTTCCCTCAAAACCA 51266140 Query 9288 TCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCT-GGCATACC 9346 ||||| || |||| |||||||| | |||||||| ||||||||||| || | || Sbjct 51266141 TCCATTTCAATCAAGAGTTGGTTCAAGGTTTGTTCACGTTCATCATTTCCTCCACCTA-G 51266199 Query 9347 ACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGA 9393 ||| ||| ||||| || || ||||| || ||||| || |||| Sbjct 51266200 GCCAACACCACGTTGGCGACCAACAGCATCTATTTCATCGATAAAGA 51266246 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589980615631000