Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20hellerii_20[genbank_20GCA_5F001443345.1_202015-11-13] 25 sequences; 733,802,474 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq16 131 4e-25 seq13 122 2e-22 seq18 109 1e-18 >seq16 Length=24388307 Score = 131 bits (144), Expect = 4e-25 Identities = 157/212 (74%), Gaps = 6/212 (3%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| || |||||||| || || | ||||| || | || || | |||||||| Sbjct 2613254 ACCAGGTGGAGGGTGGACTCCTTCTGGACGTTGTAGTCCGACAGGGTGCGGCCATCTTCC 2613195 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 ||||| || || || ||||| || | || ||||| ||||||||||||||||| || ||| Sbjct 2613194 AGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGAATGCCTTCTTTATCCTGA 2613135 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTC 195108 || ||| ||| |||||||||||||| || ||| ||||| || ||||| | ||| Sbjct 2613134 ATCTTTGCCTTCACGTTCTCAATGGTATC---ACTGGGCTCCACCTCCAGGGTGATGGTC 2613078 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || || | ||||| ||||| | ||||| Sbjct 2613077 TTCCCAGTGAGGGTTTTCACGAAAATCTGCAT 2613046 >seq13 Length=27080333 Score = 122 bits (134), Expect = 2e-22 Identities = 153/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 ||||||||| || ||||| ||||| || || ||||| |||| || || | |||||||| Sbjct 11060537 AACAAGGTGGAGGGTGGATTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTC 11060596 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 ||||| || || || ||||| || | || ||||| || || ||||| || || || || Sbjct 11060597 CAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTG 11060656 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110 || || ||||||||||||||||||||| |||||| || ||||| | || || Sbjct 11060657 GATCTTGGCCTTGACGTTCTCAATGGTGTCGCTGGGTTCCACCTCCAGGGTGATGGTTTT 11060716 Query 195111 TCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || | || || || || | |||||| Sbjct 11060717 GCCGGTGAGGGTCTTGACAAAGATTTGCAT 11060746 Score = 116 bits (128), Expect = 8e-21 Identities = 152/209 (73%), Gaps = 6/209 (3%) Strand=Plus/Plus Query 194935 AGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGC 194994 |||||||| |||||||| || || |||||||| |||| || || | |||||||| ||| Sbjct 11062552 AGGTGAAGGGTGGACTCCTTCTGGATATTGTAGTCGGACAGGGTGCGGCCATCTTCCAGC 11062611 Query 194995 TGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATT 195054 ||||| || || ||||| || | || ||||| || || ||||| || || || || || Sbjct 11062612 TGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGGATC 11062671 Query 195055 TTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTCTTT 195111 || ||| |||||||||||||| || ||| ||||| || ||||| | || || Sbjct 11062672 TTGGCCTTAACGTTCTCAATGGTATC---ACTGGGCTCCACCTCCAGGGTGATGGTTTTG 11062728 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || | ||||| || || | ||||| Sbjct 11062729 CCGGTGAGGGTTTTCACAAAGATCTGCAT 11062757 >seq18 Length=80077792 Score = 109 bits (120), Expect = 1e-18 Identities = 152/212 (72%), Gaps = 6/212 (3%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| || |||||||| || || |||||||| |||| || || | ||||| || Sbjct 51870064 ACCAGGTGGAGGGTGGACTCCTTCTGGATATTGTAGTCGGACAGGGTGCGGCCATCCTCC 51870123 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || || ||||| || | || ||||| || || ||||| || || || || Sbjct 51870124 AGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGG 51870183 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTC 195108 | || ||||||||||||||||||||| ||| || || || ||||| | || Sbjct 51870184 AGCTTGGCCTTGACGTTCTCAATGGTGTC---ACTGGGCTCAACCTCCAGGGTGATGGTT 51870240 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || || | || || ||||| | ||||| Sbjct 51870241 TTGCCAGTGAGGGTCTTGACGAAGATCTGCAT 51870272 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109481244619175