Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20hellerii_20[genbank_20GCA_5F001443345.1_202015-11-13] 25 sequences; 733,802,474 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq13 114 8e-21 seq18 104 2e-17 seq16 104 2e-17 >seq13 Length=27080333 Score = 114 bits (126), Expect = 8e-21 Identities = 170/241 (71%), Gaps = 5/241 (2%) Strand=Plus/Plus Query 34747 AATCATTTCCT-----CCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAAT 34801 |||||||| || ||||||| | | ||| | ||| | ||| ||||||||| || Sbjct 11060507 AATCATTTACTGGCCACCCCTCAGACGGAGAACAAGGTGGAGGGTGGATTCTTTCTGGAT 11060566 Query 34802 GTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTG 34861 ||| ||||| || ||| | || |||| ||||||||||| || ||||| || || | || Sbjct 11060567 GTTGTAGTCGGACAGGGTGCGGCCATCTTCCAGCTGTTTGCCAGCAAAGATCAGCCTCTG 11060626 Query 34862 CTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTC 34921 |||||| | || | |||||||| || ||||| |||||| | || | || Sbjct 11060627 CTGGTCAGGGGGGATGCCCTCCTTATCCTGGATCTTGGCCTTGACGTTCTCAATGGTGTC 11060686 Query 34922 ACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | || || || || | ||| |||||||| || ||||| ||||| |||||||| ||||| Sbjct 11060687 GCTGGGTTCCACCTCCAGGGTGATGGTTTTGCCGGTGAGGGTCTTGACAAAGATTTGCAT 11060746 Query 34982 A 34982 | Sbjct 11060747 A 11060747 Score = 113 bits (124), Expect = 3e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 34775 CAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAG 34834 || ||||| ||| || ||||| || || ||||| || ||| | || |||| ||||| Sbjct 11062551 CAGGTGAAGGGTGGACTCCTTCTGGATATTGTAGTCGGACAGGGTGCGGCCATCTTCCAG 11062610 Query 34835 CTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAAT 34894 ||| ||||||||||| || || | |||||||| | || | |||||||| || || Sbjct 11062611 CTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGGAT 11062670 Query 34895 CTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCC 34954 ||| || ||| | || | |||| || ||| || || | ||| |||||||| || Sbjct 11062671 CTTGGCCTTAACGTTCTCAATGGTATCACTGGGCTCCACCTCCAGGGTGATGGTTTTGCC 11062730 Query 34955 CGTGAGAGTCTTCACAAAGATCTGCATATT 34984 ||||| || ||||||||||||||||| || Sbjct 11062731 GGTGAGGGTTTTCACAAAGATCTGCATCTT 11062760 >seq18 Length=80077792 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 || ||||||| | | |||| ||| | ||| || ||||| || || ||||| || Sbjct 51870046 CCACCCCTCAGACGGAGGACCAGGTGGAGGGTGGACTCCTTCTGGATATTGTAGTCGGAC 51870105 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 ||| | || |||| |||||||| || || ||||| || || | |||||||| | || Sbjct 51870106 AGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGG 51870165 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACA 34934 | |||||||| || | ||| |||||| | || | |||| || |||||| Sbjct 51870166 ATGCCCTCCTTATCCTGGAGCTTGGCCTTGACGTTCTCAATGGTGTCACTGGGCTCAACC 51870225 Query 34935 TCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || | ||| |||||||| || ||||| ||||| || ||||||||||| Sbjct 51870226 TCCAGGGTGATGGTTTTGCCAGTGAGGGTCTTGACGAAGATCTGCAT 51870272 >seq16 Length=24388307 Score = 104 bits (114), Expect = 2e-17 Identities = 162/232 (70%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 34754 TCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGA 34813 ||||||||||| | | |||| ||| | ||| || ||||| | ||| |||||||| Sbjct 2613273 TCCTCCCCTCAGGCGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGACGTTGTAGTCCGA 2613214 Query 34814 AAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGG 34873 ||| | || |||| ||||||||||| || ||||| || || | |||||||| | || Sbjct 2613213 CAGGGTGCGGCCATCTTCCAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGG 2613154 Query 34874 CACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAAC 34933 | || || || || |||||| || ||| | || | |||| || ||| || Sbjct 2613153 AATGCCTTCTTTATCCTGAATCTTTGCCTTCACGTTCTCAATGGTATCACTGGGCTCCAC 2613094 Query 34934 ATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATATTC 34985 || | ||| ||||| || || ||||| || ||||| || |||||||| ||| Sbjct 2613093 CTCCAGGGTGATGGTCTTCCCAGTGAGGGTTTTCACGAAAATCTGCATCTTC 2613042 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324633501088200