Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20hellerii_20[genbank_20GCA_5F001443345.1_202015-11-13] 25 sequences; 733,802,474 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq25 102 9e-17 >seq25 Length=32766887 Score = 102 bits (112), Expect = 9e-17 Identities = 443/697 (64%), Gaps = 4/697 (1%) Strand=Plus/Plus Query 47955 CATTTGATAGTACCCAAATTTTGATGATTATTNNNNTTGTTACATGCGTCCTTGTAAAGC 48014 || ||||| || |||| || || || || | |||| || ||||||||||| ||| Sbjct 10520614 CACTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTCCTGTTGCAAGCGTCCTTGTAGAGC 10520673 Query 48015 ATAAAAGGTGTTCCAGTTTCTATCTGAGATTCAATGATAGATTTCCAAACAGTCCTAGCC 48074 || | || || || ||||| |||| || || ||||| | | ||| | | ||| Sbjct 10520674 ATGTAGGGGGTCCCGGTTTCGGTCTGGGACTCGATGATGGCGTACCAGAGCTGCTGCGCC 10520733 Query 48075 TTTATAACAGCTCTAGCTTTATTATCATGTTCGTATTTAGTATATAACTTCTCAAATTCA 48134 || | || | | || | || | || ||||| || || | |||||| || || Sbjct 10520734 TTCACCACCCTTTTCACTCTCCCTTCCTTCTCATATTTGGTGTAGAGCTTCTCGAACTCC 10520793 Query 48135 TCCCCATA-CACATTATCTAACCCAGGACATTCATTAGGACACATCAATGACCAATCCTC 48193 || || | ||| | || | ||||||||| || | ||||||||||| ||||| |||| Sbjct 10520794 TCTCCCCAGCAC-TCGTCCAGCCCAGGACACTCGCTGGGACACATCAAGGACCAGTCCTG 10520852 Query 48194 ATCATTTTTTACTCTAGTCATAAATATATCTGGTATCCA-AAGAGCTATAAATAAATCCC 48252 | | | ||||| |||| || | || || ||||| ||| || ||| | || | Sbjct 10520853 GTTGCTCTCCACTCTCTTCATGAACAGGTCAGGGATCCACAAGGCGTAGAAA-AGGTCTC 10520911 Query 48253 TAGTTCTTAGTTCTTCATTGCCACTATTCCTTTTAAGTTCAAGAAAGTCCATTATATCAG 48312 | | ||| | || || || || | ||| | || || || || ||||| | | || Sbjct 10520912 TGGCTCTCTGCTCCTCCTTTCCTGTGTTCTTCTTCAGCTCCAGGAAGTCGAACACGTCGA 10520971 Query 48313 CATGCCATGGTTCTAAATATATTGCCATTACACCTGGTCGTTTATTACCTCCTTGATCTA 48372 |||||||| || | ||| || || | | || |||| || || || || || || | Sbjct 10520972 AGTGCCATGGCTCCAGATACATGGCGAAGGCCCCGGGTCTCTTGTTGCCGCCCTGGTCAA 10521031 Query 48373 TATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCATTTGATATACCAT 48432 || | || || ||||| |||||||| | ||| || || | || || || | || | Sbjct 10521032 CGTACCGAGCGGTGTTGTTGTAAACTCTCAGCATCGGCACCAACCCGTTGGAGTTGCCGT 10521091 Query 48433 TGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGAAATACCTATACCAC 48492 |||| || | || || ||||| | | || || || | | | || || || | Sbjct 10521092 TGGTGCCTGCGATGTAGCTTCCCGTCGATCGGATGCAGCTCACCGCCACGCCGATCCCGC 10521151 Query 48493 CTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATTCCTTCTATACTAT 48552 | || || || || || || ||| | || ||||| || || || ||||| || || | Sbjct 10521152 CAGCGGACTTGGAAATGAGCGCGCACTGCTTCAGGGTGTCGTAGATGCCTTCGATGCTGT 10521211 Query 48553 CATCTATCATATTTAATAGAAAACAACTAGACATTTGCGGATGACAAGTTCCTGAATTAA 48612 | || |||| | || || ||||| |||| ||||| | || || | || | Sbjct 10521212 CGTCCTTCATGGCGAGCAGGAAGCAACTGGACAGCTGCGGCCGGTTGGTCCCGGCGTTGA 10521271 Query 48613 ATAATGTTGGAGATGCATGAATAAACCATTTCTCTGA 48649 | | || ||||| || || | ||||| ||||| || Sbjct 10521272 AGAGGGTCGGAGAGGCGTGGGTGAACCACTTCTCCGA 10521308 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562108624341000