Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20hellerii_20[genbank_20GCA_5F001443345.1_202015-11-13] 25 sequences; 733,802,474 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq1 178 1e-38 seq16 105 5e-17 seq10 105 5e-17 >seq1 Length=30011118 Score = 178 bits (196), Expect = 1e-38 Identities = 402/594 (68%), Gaps = 14/594 (2%) Strand=Plus/Plus Query 549995 ATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAAGTT 550054 || || || ||| | || ||||| || |||||| || || | || |||| ||||| Sbjct 12113638 ATTGGCATCGATCTGGGCACCACCTACTCTTGTGTCGGGGTCTTCCAGCATGGAAAAGTG 12113697 Query 550055 GAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGGAA 550114 |||||||| |||||||||||||| ||||| || ||||| || || | || || || Sbjct 12113698 GAAATTATCGCCAATGATCAAGGCAACAGGACAACTCCCAGCTACGTGGCCTTTACCGAC 12113757 Query 550115 ACTGAACATTTAGTTGGTGATGCAGCAAAATATCAA---GCCACTGGTAATCCTACCAAT 550171 || || | | || ||||| || || | ||| |||| || || || ||||| Sbjct 12113758 ACAGAGAGGCTCATCGGAGATGCTGCCAAGAACCAAGTTGCCA-TG--AACCCCACCAAC 12113814 Query 550172 ACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCA 550231 || || |||||||| ||||| | ||||||||||| ||| |||| | || ||| | Sbjct 12113815 ACGATCTTTGATGCCAAACGGCTCATTGGAAGAAGGTTTGATGACCTGGTGGTCCAGTCT 12113874 Query 550232 GATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTATATTGAAGCT 550291 || ||||| | ||||| ||| | | | || | ||||| || | | | || | Sbjct 12113875 GACATGAAACTCTGGCCGTTCAAGGTGATCAACGACAACGGAAAGCC-CAAAGTCCAGGT 12113933 Query 550292 --ACTCATGAAGGATCTGTTAAACAATTTTCACCAGAACAAATTTCATCTATGGTTTTAA 550349 | | || ||||| |||| ||| | || ||| | ||||| || ||||| | Sbjct 12113934 GGAAT-ATAAAGGAGAAATTAAGACATTCTGTCCTGAAGAGATTTCCTCGATGGTCCTGG 12113992 Query 550350 TGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAAGTTACGGATGCAGTAATAA 550409 | ||||||| | ||| ||| || ||| | || || || || |||| || || | Sbjct 12113993 TTAAAATGAGAGAAATAGCTGAGGCCTTTCTGGGACAGAGGGTGTCGAATGCGGTCATCA 12114052 Query 550410 CTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATTG 550469 | || ||||| || |||||||| || ||| | ||||| || || ||||||||| || Sbjct 12114053 CAGTGCCAGCTTACTTTAATGATTCCCAAAGGCAAGCCACAAAGGATGCTGGAGTGATCT 12114112 Query 550470 CTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGAC 550529 | ||||| |||||||| || || || ||||| || || ||||| || |||| || || | Sbjct 12114113 CCGGACTAAATGTTCTCCGCATCATAAATGAGCCGACAGCTGCAGCCATTGCCTACGGCC 12114172 Query 550530 TTGATAAA--CATAATGATCAAGAACTTAATGTACTCATCTTTGATTGTGGAGG 550581 |||||||| || || || ||| | || || |||||||||||| ||| || Sbjct 12114173 TTGATAAAGGCA-AAAGA-GGAGAGCGCAACGTCCTCATCTTTGATCTTGGTGG 12114224 Score = 161 bits (178), Expect = 8e-34 Identities = 448/682 (66%), Gaps = 10/682 (1%) Strand=Plus/Plus Query 551913 ACTGCTTGCGAAAGAGCCAA-ACGAGCTCTTTCATCTGGTACTCAAACCACTATTGAAGT 551971 || ||||| || ||||| || | || || | || || | ||||| | | ||||| | Sbjct 12114412 ACAGCTTGTGAGAGAGCAAAGAGGACCT-TGTCCTCCAGCACTCAGGCAAGCATTGAGAT 12114470 Query 551972 AGATTCATTATTTGAGGGAATTGATTATAATACGCCTATTTCGAGGGCCAAATTTGAAGA 552031 || ||| | |||||||| ||||| | | | || | || | ||||| || || || Sbjct 12114471 TGACTCACTCTTTGAGGGCATTGACTTTTACACCTCAATCACAAGGGCACGCTTCGAGGA 12114530 Query 552032 TATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCAGTAGAACAAGTTTTAAGAGATTC 552091 | || || |||||||| |||| | || ||||| || | | || |||| | Sbjct 12114531 GCTCAACTCAGACCTCTTTAGGGGAACACTGGAGCCAGTTGAGAAGGCCCTACAAGATGC 12114590 Query 552092 AAAGATTGATAAATCCAAAGTACATGAAATTGTGCTTGTTGGTGGATCTACAAGAATTCC 552151 ||| | ||||||||||| | || ||| |||| || |||||||| ||||||||||| || Sbjct 12114591 TAAGCTGGATAAATCCAAGATCCACGAAGTTGTCCTAGTTGGTGGCTCTACAAGAATCCC 12114650 Query 552152 TAAAATTCGCGAAATG----TTAAGTTCTTATTTCAATGGTAAAAAATTAAATGAAAGTG 552207 ||||| | ||| | | || ||| |||||||||| | || |||| | || Sbjct 12114651 CAAAAT---CCAAAAGCTCCTGCAGGACTT-CTTCAATGGTAGAGAACTAAACAAGAGCA 12114706 Query 552208 TTAATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCAGCTATTCTTTCTGGAC 552267 | || || ||||| || || ||||||||||| ||| | || || ||||| || || Sbjct 12114707 TCAACCCTGATGAAGCGGTGGCCTATGGTGCAGCAGTCCAGGCTGCTATCCTCATGGGTG 12114766 Query 552268 AAACTGATGAAAAACTACAAAATATTGTACTTGTAGATGTTACTCCTCTATCTCTTGGTT 552327 | || ||||| | ||| || | | || | ||||| | || | || || || Sbjct 12114767 ACACCTCAGAAAATGTCCAAGATTTACTGCTCCTGGATGTGGCACCCTTGTCGCTGGGCA 12114826 Query 552328 TAGAAACAGTTGGAGGTATTATGACTAATCTTATCGATAGAAATACTACTATTCCTTGTA 552387 | || |||| || || ||||||| ||||||| | |||| || || || || | Sbjct 12114827 TTGAGACAGCCGGTGGCGTTATGACACCTCTTATCAAGCGAAACACCACCATCCCCACAA 12114886 Query 552388 AAAAATCTCGTGTATTTTCTACGTATTCAGATAATCAAACTGCTGTTACAATTCAAATTT 552447 | | ||| | || || || || |||||||| || | | || ||||| | | Sbjct 12114887 AGCAGACTCAGATCTTCTCCACATACTCAGATAACCAGCCAGGAGTCCTGATTCAGGTCT 12114946 Query 552448 TTGAAGGAGAAAGAAAATTCACTAAAGATAATAATCAACTTGGTACTTTTAATTTAGAAG 552507 |||||| || ||| | || || || || |||| || || | ||| | | | Sbjct 12114947 ATGAAGGTGAGAGAGCCATGACAAAGGACAACAATCTCCTGGGGAAGTTTGAGCTCTCTG 12115006 Query 552508 GTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCGATATCGATGCCA 552567 || ||||||||||||| | || || || || || |||||||| || |||||||| |||| Sbjct 12115007 GTCTTCCTCCTGCTCCCAGAGGCGTGCCACAGATCGAAGTTACCTTTGATATCGACGCCA 12115066 Query 552568 ATGGAATTTTGAATGTGACTGC 552589 | || || | |||||| |||| Sbjct 12115067 ACGGCATCCTAAATGTGTCTGC 12115088 >seq16 Length=24388307 Score = 105 bits (116), Expect = 5e-17 Identities = 119/157 (76%), Gaps = 2/157 (1%) Strand=Plus/Minus Query 563319 ATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTT 563378 |||||| || ||||| || ||||| || || || ||||| ||||||||||| |||||||| Sbjct 2613201 ATCTTCCAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGAATGCCTTCTTT 2613142 Query 563379 ATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGAGAGTAA 563437 ||| ||||| ||| || || |||||| |||||| || | | || || || || | Sbjct 2613141 ATCCTGAATCTTTGCCTTCACGTTCTCAATGGTATCACTG-GGCTCCACCTCCAGGGTGA 2613083 Query 563438 CAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 || || ||||| || ||||| |||||||| ||||| Sbjct 2613082 TGGTCTTCCCAGTGAGGGTTTTCACGAAAATCTGCAT 2613046 >seq10 Length=29643077 Score = 105 bits (116), Expect = 5e-17 Identities = 105/135 (78%), Gaps = 1/135 (1%) Strand=Plus/Minus Query 550398 ATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATG 550457 ||||||| || || || || || || || |||||||| || ||||| || || ||||||| Sbjct 16873768 ATGCAGTTATCACAGTTCCTGCTTACTTCAATGACTCCCAGCGTCAGGCCACCAAAGATG 16873709 Query 550458 CTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCAC 550517 |||| || |||| || ||||| ||||| |||||||||||||| || || || || Sbjct 16873708 CTGGTACCATCTCTGGCCTCAATGTGCTTCGCATTATCAATGAACCCACAGCCGCAGCCA 16873649 Query 550518 TTGCATATGGACTTG 550532 |||||||||| |||| Sbjct 16873648 TTGCATATGG-CTTG 16873635 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4029294677887250