Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20hellerii_20[genbank_20GCA_5F001443345.1_202015-11-13] 25 sequences; 733,802,474 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq6 168 5e-37 seq19 100 2e-16 >seq6 Length=22489619 Score = 168 bits (186), Expect = 5e-37 Identities = 138/168 (82%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 30150 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTC 30209 ||||||| |||||||||| ||||| |||||||| ||||| || ||||| ||||||||||| Sbjct 14544979 CATGTCCTTGTACTCTGCACCGAAGTGCCTCCATTGGAAACCATACACAGGTCCCAGGTC 14544920 Query 30210 TCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTC 30269 ||||| ||||| | ||||||| |||||||| ||||| | ||| ||||||||||| Sbjct 14544919 CCCCTCCTCCCTCTCTGTGAAGCCCAGGTTGTCCAAGAAGTCACGGGACCCGTTGGCGTC 14544860 Query 30270 CCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCC 30317 ||||||||| || || ||||| || |||||||||| ||||| || || Sbjct 14544859 CCAGATCTTCACTCCTTTCTCTGACAGCTCTTTGGCATTTGTTGATCC 14544812 Score = 132 bits (146), Expect = 4e-26 Identities = 126/161 (78%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 29869 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 29928 || || || | ||| || |||||||| ||||| || | |||||||||||||| || || Sbjct 14545859 AGTCCTGTAATGTGTGCAATCATGTAGGTGAGAAGTGCATAGCTGGCGATGTTGAAAGGC 14545800 Query 29929 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTC 29988 ||||| || |||||||| | || | |||||| |||||||| || ||||| ||||||| Sbjct 14545799 ACCCCCAGACCCATGTCGGCGGAGCGCTGGTACAGCTGACAGGACAGCTCCCCGTCGCAG 14545740 Query 29989 ACGTAAAACTGACACATGGTGTGGCACGGAGGAAGAGCCAT 30029 ||||| |||||||| | || |||||| || || || ||||| Sbjct 14545739 ACGTAGAACTGACAGAGGGCGTGGCAGGGGGGCAGCGCCAT 14545699 >seq19 Length=33316517 Score = 100 bits (110), Expect = 2e-16 Identities = 84/103 (82%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 112107 CTCCCTGCTGAGGACTACGTTTATCCTGTCTCTCAGAGGTCTATTCTTTTCGGGGATGGA 112166 ||||||||||||||| | ||| |||||| || |||| || || ||||| || ||||| || Sbjct 4585294 CTCCCTGCTGAGGACGATGTTGATCCTGCCTTTCAGTGGCCTGTTCTTCTCTGGGATTGA 4585353 Query 112167 GAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTGCCT 112209 |||||| ||||| || ||||| | |||||| |||| | ||||| Sbjct 4585354 GAACCAGGTCTTCCTGCCCATGACCACCACATTCTTCCTGCCT 4585396 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408617475499325