Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20hellerii_20[genbank_20GCA_5F001443345.1_202015-11-13] 25 sequences; 733,802,474 total letters Query= NC_018837.1 Length=122024 Score E Sequences producing significant alignments: (Bits) Value seq18 89.7 4e-13 >seq18 Length=80077792 Score = 89.7 bits (98), Expect = 4e-13 Identities = 245/369 (66%), Gaps = 6/369 (2%) Strand=Plus/Plus Query 54017 ACCGAGAAAGAAGTGTACGATGCCTGTCAAGCACTGGAGTATGAGTGCAATTCTCTTTAT 54076 ||| | ||||| | ||||||||| ||| | || |||||||| ||| |||| | Sbjct 63062268 ACCCAAAAAGACATCTACGATGCCATGCAATCTCTTGAGTATGAAATCAACACTCTCTTC 63062327 Query 54077 AACTCCAATGGTCAGACCCCATTTATTACATTCGGATTTGGTCT-GGGAGAA-TC-TTGG 54133 | || ||||| || || || |||| | | | || |||||| | |||| | || || Sbjct 63062328 ACTTCAAATGGGCAAACACCTTTTACTTCGCTAGGTTTTGGTTTAGGGACTAGTCGTTTT 63062387 Query 54134 GAGTCTAGACTAATCCAAAGATCTATTCTAGAAGTCCGTATGAAAGGTCTAGGAGCAGAC 54193 ||| | || ||| |||| | |||| || | |||| || || || || || |||| Sbjct 63062388 GAG-CGGGA--AATTCAAAAAGCTATCTTAAACATCCGAATCAAGGGACTTGGTTCAGAA 63062444 Query 54194 AAACGTACAGCTATTTTTCCTAAGCTGGTGTTTGCATTGAAACCTGGTCTCAATATGCAA 54253 | || ||||| || || ||||| || | ||| |||| ||| || ||||| | || Sbjct 63062445 CACCGCACAGCCATCTTCCCTAAACTCATCTTTACATTAAAAAGAGGCCTCAACTTAGAA 63062504 Query 54254 GCAGGAGATCCTAACTACGACATTAAACAGTTAGCTATTAAATGTACTTCTGAGCGTATT 54313 | || ||||||||||| || |||||||| || | | ||| | | |||| || Sbjct 63062505 GAGGGTTCACCTAACTACGATATCAAACAGTTGGCCCTCGAGTGTGCAACCAAGCGGATG 63062564 Query 54314 TACCCTGACTACGTGAGTTATGATAAGGTTGTGGAAGTTACGGGAGACTTTAAGTTCCCT 54373 |||||||| | || || |||||| || | ||| | || || || ||| | ||| Sbjct 63062565 TACCCTGATGTCTTGTCCTACGATAAGATTATCGAACTGACAGGTTCTTTCAAGGTTCCT 63062624 Query 54374 ATGGGTTGC 54382 ||||| ||| Sbjct 63062625 ATGGGCTGC 63062633 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 390351881064625