Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20hellerii_20[genbank_20GCA_5F001443345.1_202015-11-13] 25 sequences; 733,802,474 total letters Query= NC_019418.1 Length=37282 Score E Sequences producing significant alignments: (Bits) Value seq18 172 1e-38 >seq18 Length=80077792 Score = 172 bits (190), Expect = 1e-38 Identities = 185/245 (76%), Gaps = 0/245 (0%) Strand=Plus/Plus Query 29452 ACGCGCTGTCCTTGTTGATTGTCATAGTAGCGTGTTTGAATGTTGCCTGTAATACCAATC 29511 || || |||||||| || || || || || || || || |||||| || || || Sbjct 59385893 ACACGTTGTCCTTGCTGGTTATCGTAACTACGAGTCTGGATACGGCCTGTGATCCCGATA 59385952 Query 29512 AATGCGCCTTTCTTAGCCCAATTAGCAAGATTTTCTGCCGCTTGTCTCCAAATAACACAA 29571 | | |||||| |||||||| |||||||||||||| ||| ||| | ||| || || | Sbjct 59385953 AGAGAGCCTTTTTTAGCCCAGTTAGCAAGATTTTCAGCCTGTTGACGCCACATCACGACA 59386012 Query 29572 TTAATAAAATCAGCCTCACGCTCTCCATTTTCATTTTTGAATGGGCGATTTACTGCAAGG 29631 || ||||||||||||||||| || ||||||| | | || || | || ||||||||||| Sbjct 59386013 TTGATAAAATCAGCCTCACGTTCGCCATTTTGACTCTTAAACGTACGGTTTACTGCAAGA 59386072 Query 29632 GTAAAAGTGGCAACTGCAACATTTGATGGTGTATATCTTAATTCAGCATCTCTAGTCAGT 29691 |||||||| |||||||| ||||||||||| ||||| | || ||||| || | |||| Sbjct 59386073 GTAAAAGTCGCAACTGCTACATTTGATGGGGTATAACGCAACTCAGCGTCACGGGTCATA 59386132 Query 29692 CGCCC 29696 ||||| Sbjct 59386133 CGCCC 59386137 Score = 158 bits (174), Expect = 3e-34 Identities = 281/406 (69%), Gaps = 8/406 (2%) Strand=Plus/Plus Query 22170 TTGTGATTTTAATTTTTCAATCTCAAGCTCTAGTTTTTCAGACTGTTTAGCTGTTGGGTA 22229 ||| ||||| | ||| || || |||||||| |||||||||| |||||||| || || || Sbjct 30100157 TTGAGATTTAAGTTTCTCTATTTCAAGCTCAAGTTTTTCAGCTTGTTTAGCAGTCGGATA 30100216 Query 22230 GCGTTTTAAGATTTCAGTAATTGCTTTAATAACTGTTGCATTATCAGCTTTCTTGGTGTG 22289 ||||| || ||||||| || ||||| |||||||| |||||| || || || || Sbjct 30100217 TCGTTTCAATATTTCAGCTATCGCTTTGATAACTGTGTTATTATCCGCCTTTTTCGTAAC 30100276 Query 22290 TCTCTCAACTTTCCCTGTTGTTGGGTTAAGTATCAACACCTCCTCATCTCGTTTACCTCT 22349 ||| || || | || ||| || || | ||||| || || ||| ||| || ||||| Sbjct 30100277 TCTGTCCACCTCACCAGTTACCGGATTCATCATCAAAACTTCTTCAAGTCGCTTTCCTCT 30100336 Query 22350 AGCGATTTCAGAAAGGATATAAAGCGCCTCTGTGGCATCCATGATGTTTGACTTATGCAG 22409 || || || ||||| || |||| |||||| ||||| || ||||| | |||| Sbjct 30100337 TGCAATGTCTGAAAGAATTGAAAGGGCCTCTTTGGCACTCAAAATGTTCTCATCGTGCAT 30100396 Query 22410 CTCTT--GCATCTGTTTATTGATGTACTCTTTTATCCCAACATTTCCCAACAATTCTGTA 22467 || || | ||||||| | ||| || ||| || | ||||| | | |||| || Sbjct 30100397 CTTTTTGGTTTCTGTTTGT--ATGAACGTTTTAATGCTTGCATTTTCTAGTAATTTACTA 30100454 Query 22468 ATGCGATTATTT--GCATAATTCTCACTATAACCAGCTTTAATTGCCGATTGATAGCCGT 22525 ||| || || || ||| |||||||||||| || ||||| ||||||||| | | Sbjct 30100455 --GCGGTTGTTCTGGCGTAAGCCTCACTATAACCGGCAAATATTGCAGATTGATAGACAT 30100512 Query 22526 TACCTGTTTTTATGTACTCATCTGCAAAGCGCCTTTGTCTTTCATT 22571 | ||||| | | ||||| ||||| | ||||||||| ||| Sbjct 30100513 TGCCTGTCCTCAAATACTCGCTCGCAAACATCTTTTGTCTTTGATT 30100558 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 119180764618200