Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20hellerii_20[genbank_20GCA_5F001443345.1_202015-11-13] 25 sequences; 733,802,474 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq25 356 4e-93 seq22 105 1e-17 seq13 93.3 8e-14 >seq25 Length=32766887 Score = 356 bits (394), Expect = 4e-93 Identities = 864/1293 (67%), Gaps = 34/1293 (3%) Strand=Plus/Plus Query 221366 CCATCGTACGACTCGTAGGGACCGTACAGTTCGGCCTGGGCGCAAGACTGCGTC-AGGGC 221424 || ||||||| ||||||||| ||| | | |||| | |||| | || || ||||| Sbjct 10520215 CCCTCGTACGTCTCGTAGGGGCCGAGCTCTGCGGCGAGCTCGCA-GCTGGCCTCCAGGGC 10520273 Query 221425 AGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTGGCCTCGGGAGAAGTGAA 221484 ||||||||||||||||| || ||| ||||||| || || |||||| ||| Sbjct 10520274 GGCGTGGTAGATGGTCTCGAACATCTGGATGTTGAGCAGCTGAGCTTCGGGACTTTCGAA 10520333 Query 221485 GGGCATACGCAGCATCTGAAAGACGTCGGCCAGTCCCTGTACTCCGATACCGATGGGCCT 221544 || |||| || ||| |||||||||| ||||| || ||||| ||||| ||||| Sbjct 10520334 AGGGTGCCGCATCAGGATGAAGGCGTCGGCCAGACCCTGGACGCCGATCCCGATCGGCCT 10520393 Query 221545 GTGTCTCCTGTTGGAAGCGGCCGCTTCTGGCACGGGATAAAAGTTGACGTCGATCAGATT 221604 ||| | | ||||||||| | ||||| || || || || |||||| |||||| | || Sbjct 10520394 GTGGCGCTTGTTGGAAGTCTCGGCTTCGGGAACCGGGTAGTAGTTGATGTCGATGATCTT 10520453 Query 221605 GTTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTCTGGTGATTGAACACCAA 221664 ||||||||| ||| || || || || |||||||| | | ||| | Sbjct 10520454 GTTGAGGTTTTTCACGATTACCTTGGTGACGGAGGCCAGCTTCTTGAAGTCGAA-----A 10520508 Query 221665 CTCGCCGCCGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGCAACGCTGGCCAGGTTACA 221724 || | | | |||| | ||| ||| ||||| | | ||||||||| || Sbjct 10520509 GTCCGCTCTGGCGTGACGT------ACAT----GTTGAGGGCGATGGAGGCCAGGTTGCA 10520558 Query 221725 CACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAGGTTGCTGCACTT 221784 |||||||||||||||||| |||| |||| | | ||| || ||||||||||||||||| Sbjct 10520559 GACGGCCACCTCGTCCTTGCTGGTGTACTCCACCACCTCCGTGCAGAGGTTGCTGCACTT 10520618 Query 221785 GATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTTGTAGAGCATAAA 221844 |||||| ||||||| | || || ||| | ||| |||||||||||||||||| | Sbjct 10520619 GATGGTGCCCAGGTTCTGCTGGTTGCTCTTCCTGTTGCAAGCGTCCTTGTAGAGCATGTA 10520678 Query 221845 GGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAGTTCTCTG-GCGCTCA 221903 ||| || || || ||| | | | | || || |||||| | ||| || ||| Sbjct 10520679 GGGGGTCCCGGTTTCGGTCTGGGACTCGATGATGGCGTACCAGAGCTG-CTGCGCCTTCA 10520737 Query 221904 CCGTCCTCTTGACTGCACCCTCGGTCTTTTCATACCCGGTATAGAGCATGTCAAACTTTT 221963 || ||| || ||| || || ||| ||||| ||| |||||| | || |||| | Sbjct 10520738 CCACCCTTTTCACTCTCCCTTC---CTTCTCATATTTGGTGTAGAGCTTCTCGAACTCCT 10520794 Query 221964 CACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACACATCAGACTCCAGTGCTTGT 222023 | || | ||||||||| || |||||| | ||||||||||| ||||| || || Sbjct 10520795 CTCCCCAGCACTCGTCCAGCCCAGGACACTCGCTGGGACACATCAAGGACCAGTCCTGGT 10520854 Query 222024 TGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCTGAAAGAGATCTCTGG 222083 || | || |||| |||||| ||||| |||||||||| || | || || ||||||| Sbjct 10520855 TGCTCTCCACTCTCTTCATGAACAGGTCAGGGATCCACAAGGCGTAGAAAAGGTCTCTGG 10520914 Query 222084 TCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACTCAAAAATGTCAGCGT 222143 | |||||||||| || |||| ||| |||| |||| || || || | ||| || Sbjct 10520915 CTCTCTGCTCCTCCTTTCCTGTGTTCTTCTTCAGCTCCAGGAAGTCGAACACGTCGAAGT 10520974 Query 222144 GCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGTTGCCACCCTGATCCACCA 222203 |||| ||||||||||| | ||| | || ||||||| ||||||||| ||||| || || Sbjct 10520975 GCCATGGCTCCAGATACATGGCGAAGGCCCCGGGTCTCTTGTTGCCGCCCTGGTCAACGT 10521034 Query 222204 TCCTCTCCAGAGCGTTGAAGATGCGAAGGGTCGGTACCAGTCCGTTGGATCGACCGTTGG 222263 || | |||| | | | || |||| |||| |||||||| ||||||| Sbjct 10521035 ACCGAGCGGTGTTGTTGTAAACTCTCAGCATCGGCACCAACCCGTTGGAGTTGCCGTTGG 10521094 Query 222264 TGCCCTTAATGTACGCACCGCCGGCCCTC--AGGTTACTGGCAGACATGCCGATACCACC 222321 |||| ||||| || | ||| | || | | || | | || |||||| || || Sbjct 10521095 TGCCTGCGATGTA-GCTTC-CCGTCGATCGGATGCAGCTCACCGCCACGCCGATCCCGCC 10521152 Query 222322 GGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGTCCATGATGCCCTCCATAGAGTC 222381 ||| || || || | ||||| ||| || ||||| |||||| || || ||| Sbjct 10521153 AGCGGACTTGGAAATGAGCGCGCACTGCTTCAGGGTGTCGTAGATGCCTTCGATGCTGTC 10521212 Query 222382 CTCCTTGACGTTCAGCAGAAAACAAGACGACATCTGAGATTTGGTGGAACAGGCGTTAAA 222441 ||||| | | ||||| || ||| |||| ||| | | ||| | |||||| || Sbjct 10521213 GTCCTTCATGGCGAGCAGGAAGCAACTGGACAGCTGCGGCCGGTTGGTCCCGGCGTTGAA 10521272 Query 222442 CAGCGTGGGACTGGCGTGTGTAAAGTAGCCCCTAGACATCAGATCGTACGTCTCTACGAC 222501 || || ||| |||||| || || | | |||| || | ||| ||||| ||| | Sbjct 10521273 GAGGGTCGGAGAGGCGTGGGTGAACCACTTCTCCGACAGGAGGTTGTAGGTCTCGACGGC 10521332 Query 222502 TCTGGCGATGTTGTCCCCGTGAATCTGCATGGCGCATCTCATGTACATGTACTGGGGCCT 222561 | |||||| |||||| ||| | | |||||| ||||| ||| || | Sbjct 10521333 GGCGTCGATGTCTCGCCCGTGGATCCCAACCGACACCCTCATGAGCATGTGCTGCGGTCG 10521392 Query 222562 CT---CCACAGGACCCTTGGAGCTGGAGAGCAGGTACGATTTTTCCAGAGTCTTGAACCC 222618 || |||| ||| | || || |||||||| || |||||||||||||| || Sbjct 10521393 CTCGGCCAC-TTTCCCGTTGATCT--TCAGCAGGTAGGAACGCTCCAGAGTCTTGAAGCC 10521449 Query 222619 AAAGTAGTTG-AGGTCAAAGTCTCTGCCGTGAA 222650 ||| ||||| ||| ||| |||||| ||| || Sbjct 10521450 GAAGAAGTTGTAGGAGAAA-TCTCTGTCGTAAA 10521481 Score = 107 bits (118), Expect = 4e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 221036 GAGCCCTTGTTGACCAAAAGCTCGGTACGCATCTCGTCCGTCCATAGACCCCTCTCTTCC 221095 || || |||||| | | |||| | | |||||| || |||| || || | ||| | Sbjct 10519894 GATCCGTTGTTGGCGATCAGCTTGTTCTTCATCTCCTCGTTCCACAGGCCGCGCTCCGTC 10519953 Query 221096 AGCACCTTGACCATGTGCTTGTTCACCACTTGGAAATCTCCCGAGAGCACCCTCCTCTGG 221155 || |||||| | ||| ||| || | ||||| ||||| || |||||||| | | Sbjct 10519954 AGATCCTTGAGGAGGTGAGGGTTGACGATCTGGAACTCTCCGGACAGCACCCTGCGGGTG 10520013 Query 221156 TACAGGTTAGAAGTGAACGGTTCGATGCTCTCGTTGTTGCCCAGGATCTGAGCCGTGCTG 221215 || | ||| ||| ||| |||||| ||||||||||||||||||||| || ||| Sbjct 10520014 TAGATGTTGCTGGTGTACGCCTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAC 10520073 Query 221216 GCGGTGGGCATGGGTGCCACCAGCAGACTGTT 221247 || ||||||||||| |||| |||||| ||||| Sbjct 10520074 GCCGTGGGCATGGGCGCCAGCAGCAGGCTGTT 10520105 >seq22 Length=23629796 Score = 105 bits (116), Expect = 1e-17 Identities = 99/126 (79%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 25883 TGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCT 25942 |||| ||||| || ||||||||||| ||||| ||| |||||||| || ||||||||| Sbjct 3940856 TGGTGGCCTTCGCCGCTGTGGAGGGAATCTTCTTCTCTGGTTCGTTCGCCTCCATCTTCT 3940915 Query 25943 GGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGG 26002 |||| ||| ||| || |||||||| ||| ||| |||||||||||||||| | | Sbjct 3940916 GGCTGAAGAAGAGAGGCCTGATGCCCGGCCTGACCTTCAGCAACGAGCTCATCAGCCGAG 3940975 Query 26003 ACGAGG 26008 |||||| Sbjct 3940976 ACGAGG 3940981 Score = 89.7 bits (98), Expect = 1e-12 Identities = 66/77 (86%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 26245 AACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACTTCTTTGAAAAG 26304 |||||||||||||| ||||| ||||| || |||| |||||||||||||||||||| ||| Sbjct 3941738 AACCCGTTCGACTTCATGGAGAACATTTCTCTGGAGGGGAAGACCAACTTCTTTGAGAAG 3941797 Query 26305 AGGGTCGGCGACTATCA 26321 ||||||| || || || Sbjct 3941798 CGGGTCGGGGAGTACCA 3941814 Score = 89.7 bits (98), Expect = 1e-12 Identities = 66/77 (86%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 26245 AACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACTTCTTTGAAAAG 26304 |||||||||||||| ||||| ||||| || |||| |||||||||||||||||||| ||| Sbjct 3948843 AACCCGTTCGACTTCATGGAGAACATTTCTCTGGAGGGGAAGACCAACTTCTTTGAGAAG 3948784 Query 26305 AGGGTCGGCGACTATCA 26321 ||||||| || || || Sbjct 3948783 CGGGTCGGGGAGTACCA 3948767 >seq13 Length=27080333 Score = 93.3 bits (102), Expect = 8e-14 Identities = 96/126 (76%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 222037 CTGCATGAAGAGGTCCGGGATCCACAGCGCCTGAAAGAGATCTCTGGTCCGCTGCTCCTC 222096 || ||| |||||||| || ||||||| || || || ||||||| | |||||| || Sbjct 15279193 CTTCATAAAGAGGTCTGGAATCCACAAGGCAAAGAACAGGTCTCTGGCTCTCTGCTCTTC 15279252 Query 222097 CACGCCGTTGTTTTTCCTCAGATCCAAAAACTCAAAAATGTCAGCGTGCCACGGCTCCAG 222156 || |||| ||| |||| |||||||||||||| | |||||| |||||||||||||| Sbjct 15279253 TTTACCCGTGTTCTTCTTCAGCTCCAAAAACTCAAACACGTCAGCATGCCACGGCTCCAG 15279312 Query 222157 ATAGAC 222162 || || Sbjct 15279313 GTACAC 15279318 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928844509736000