Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20hellerii_20[genbank_20GCA_5F001443345.1_202015-11-13] 25 sequences; 733,802,474 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq1 159 2e-33 seq10 104 2e-16 >seq1 Length=30011118 Score = 159 bits (176), Expect = 2e-33 Identities = 370/553 (67%), Gaps = 6/553 (1%) Strand=Plus/Plus Query 474324 GAATTGCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATG 474383 |||| | ||||| || ||| | || || || ||| |||||| | || | || ||| Sbjct 12113630 GAATATCCATTGGCATCGATCTGGGCACCACCTACTCTTGTGTCGGGGTCTTCCAGCATG 12113689 Query 474384 GTAAAGTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTT 474443 | ||||| ||||| || |||||||| ||||| || || ||||| || || || | | Sbjct 12113690 GAAAAGTGGAAATTATCGCCAATGATCAAGGCAACAGGACAACTCCCAGCTACGTGGCCT 12113749 Query 474444 TTACTGAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTG 474503 |||| || || || || || ||||||||||| || | |||| ||| || || Sbjct 12113750 TTACCGACACAGAGAGGCTCATCGGAGATGCTGCCAAGAACCAAGTTGCCATGAACCCCA 12113809 Query 474504 TTAATACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCC 474563 || || || |||||||| ||| | | ||||| | | |||||||| |||| Sbjct 12113810 CCAACACGATCTTTGATGCCAAACGGCTCATTGGAAGAAGGTTTGATGACCTGGTGGTCC 12113869 Query 474564 AATCTGATATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATAT-- 474621 | ||||| ||| | ||||| || |||||||| || | || || || | | Sbjct 12113870 AGTCTGACATGAAACTCTGGCCGTTCAAGGTGATCAACGACAACGGAAAGCCCAAAGTCC 12113929 Query 474622 AGAAGCAATACACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGT 474681 || | |||| | ||| |||| ||| ||| | || ||| | ||||| || ||||| Sbjct 12113930 AGGTGGAATATAA--AGGAGAAATTAAGACATTCTGTCCTGAAGAGATTTCCTCGATGGT 12113987 Query 474682 TTTAGCCAAAATGAAACAAACCGC-GAGCTCATATCTTGGACAAGAAGTAACTGATGCAG 474740 | | ||||||| | ||| || ||| | | ||| ||||| || | |||| | Sbjct 12113988 CCTGGTTAAAATGAGAGAAATAGCTGAGGCCTT-TCTGGGACAGAGGGTGTCGAATGCGG 12114046 Query 474741 TAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAA 474800 | || || || ||||| || ||||||||||| ||| | ||||| || || ||||| ||| Sbjct 12114047 TCATCACAGTGCCAGCTTACTTTAATGATTCCCAAAGGCAAGCCACAAAGGATGCTGGAG 12114106 Query 474801 GAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTT 474860 || | || || |||||| | || || || ||||| || ||||| || || |||| | Sbjct 12114107 TGATCTCCGGACTAAATGTTCTCCGCATCATAAATGAGCCGACAGCTGCAGCCATTGCCT 12114166 Query 474861 ATGGTCTTGATAA 474873 | || |||||||| Sbjct 12114167 ACGGCCTTGATAA 12114179 Score = 123 bits (136), Expect = 2e-22 Identities = 413/633 (65%), Gaps = 16/633 (3%) Strand=Plus/Plus Query 475548 TTGAAGTTGATTCTCTTTTTGAAGGAATTGATTATAATACTCTTATTACAAGGGCTAAAT 475607 |||| |||| || || ||||| || ||||| | | | || || |||||||| | Sbjct 12114464 TTGAGATTGACTCACTCTTTGAGGGCATTGACTTTTACACCTCAATCACAAGGGCACGCT 12114523 Query 475608 TTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCCGTTGAACAAGTTCTCA 475667 | || || | || || |||||||| |||| | || || ||||| | | || Sbjct 12114524 TCGAGGAGCTCAACTCAGACCTCTTTAGGGGAACACTGGAGCCAGTTGAGAAGGCCCTAC 12114583 Query 475668 GAGATTCTAAACTTGACAAATCACAAG-TCCATGAAATTGTTCTTGTAGGAGGTTCAACA 475726 |||| |||| || || ||||| |||| |||| ||| |||| || || || || || ||| Sbjct 12114584 AAGATGCTAAGCTGGATAAATC-CAAGATCCACGAAGTTGTCCTAGTTGGTGGCTCTACA 12114642 Query 475727 AGAATTCCAAAAATAAGAGAAATGCT--TTCATCATATTTT-AATGGTAAAAAGTTAAAT 475783 ||||| || ||||| ||| ||| | || | | || ||||||| | | |||| Sbjct 12114643 AGAATCCCCAAAATCC---AAAAGCTCCTGCAGGACTTCTTCAATGGTAGAGAACTAAAC 12114699 Query 475784 GAAAGTGTAAATCCTGATGAAGCTGTTGCATATGGAGCTGCTGTCCAAGCAGCTATTTTA 475843 | || | || ||||||||||| || || ||||| || || ||||| || ||||| | Sbjct 12114700 AAGAGCATCAACCCTGATGAAGCGGTGGCCTATGGTGCAGCAGTCCAGGCTGCTATCCTC 12114759 Query 475844 TCAGGTCAATCAGACGAGAAACTAAATAATATT--GTACTTGTTGACGTAACTCCACTTT 475901 ||| | || ||||| | || ||| | || | || || | || | | Sbjct 12114760 ATGGGTGA--CACCTCAGAAAATGTCCAAGATTTACTGCTCCTGGATGTGGCACCCTTGT 12114817 Query 475902 CATTAGGTCTTGAAACAGTTGGAGGGATTATGACTAATCTTATTGACAGAAATACTCCTA 475961 | | || |||| |||| || || ||||||| |||||| | |||| || | | Sbjct 12114818 CGCTGGGCATTGAGACAGCCGGTGGCGTTATGACACCTCTTATCAAGCGAAACACCACCA 12114877 Query 475962 TCCCATGCAA--AAAATCAAAAGTATTTTCCACTTATTCTGATAATCAAACAACTGTAAC 476019 |||| || | | ||| | | || ||||| || || ||||| || || || Sbjct 12114878 TCCCCACAAAGCAGACTCAGA--TCTTCTCCACATACTCAGATAACCAGCCAGGAGTCCT 12114935 Query 476020 CATCCAAATCTTTGAAGGTGAAAGAAAATTCACTAAAGATAATAACAAACTTGGAACTTT 476079 || || ||| ||||||||| ||| | || || || || || || || | || Sbjct 12114936 GATTCAGGTCTATGAAGGTGAGAGAGCCATGACAAAGGACAACAATCTCCTGGGGAAGTT 12114995 Query 476080 TAATCTTGAAGGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGA 476139 | | || ||| ||||||||||||||||||| || || || || |||||||| ||||| Sbjct 12114996 TGAGCTCTCTGGTCTTCCTCCTGCTCCCAGAGGCGTGCCACAGATCGAAGTTACCTTTGA 12115055 Query 476140 TATTGATGCAAATGGTATTCTTAATGTTACTGC 476172 ||| || || || || || || ||||| |||| Sbjct 12115056 TATCGACGCCAACGGCATCCTAAATGTGTCTGC 12115088 >seq10 Length=29643077 Score = 104 bits (114), Expect = 2e-16 Identities = 108/137 (79%), Gaps = 6/137 (4%) Strand=Plus/Minus Query 476033 GAAGGTGAAAGAAAATTCACTAAAGATAATAACAAACTTGG--AACTTTTAATCTTGAA- 476089 ||||| |||||| | || ||||||||||| | ||||| || ||| ||| ||| Sbjct 16871525 GAAGGGGAAAGAGCCATGACCAAAGATAATAATAT-CTTGGGGAAATTTGAAT--TGACT 16871469 Query 476090 GGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCA 476149 |||||||| ||||||||||||||||| ||||| || ||||| || ||||| |||||||| Sbjct 16871468 GGTATTCCGCCTGCTCCCAGAGGAGTCCCTCAGATCGAAGTGACCTTTGACATTGATGCC 16871409 Query 476150 AATGGTATTCTTAATGT 476166 || || ||||| ||||| Sbjct 16871408 AACGGCATTCTCAATGT 16871392 Score = 89.7 bits (98), Expect = 3e-12 Identities = 111/152 (73%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 474329 GCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAA 474388 ||| | || |||||| | || || ||||| ||||| | | | | || |||| ||| Sbjct 16874431 GCAGTAGGCATTGATCTGGGTACCACTTATTCATGTGTGGGTATCTTCCAGCATGGCAAA 16874372 Query 474389 GTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACT 474448 || || || ||||||||||||||||| || ||||| |||||| ||||| | || || Sbjct 16874371 GTGGAGATCATTGCCAATGACCAAGGGAACAGAACCACACCAAGTTATGTGGCCTTCACA 16874312 Query 474449 GAAACTGAACATCTTATTGGAGATGCTGCTAA 474480 || || || ||||||||||||||||| || Sbjct 16874311 GACACAGAGAGGCTTATTGGAGATGCTGCCAA 16874280 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3268178127628700