Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20hellerii_20[genbank_20GCA_5F001443345.1_202015-11-13] 25 sequences; 733,802,474 total letters Query= NC_020197.1 Length=45606 Score E Sequences producing significant alignments: (Bits) Value seq18 441 2e-119 >seq18 Length=80077792 Score = 441 bits (488), Expect = 2e-119 Identities = 1019/1515 (67%), Gaps = 44/1515 (3%) Strand=Plus/Minus Query 14165 GGAGGTGGATGTA--TTGGGCTAAATCAACGACAAAAGCTATTTGTTAGCGAGTATATCA 14222 ||||||| ||| | ||||| |||||||| |||||||| | |||| ||||||||| | | Sbjct 30100580 GGAGGTG-ATGGACATTGGGTTAAATCAAAGACAAAAGATGTTTGCGAGCGAGTATTTGA 30100522 Query 14223 AGCTAGGAAATGGAACTCAAGCAGCGATAAATGCTGGCTATAGTCCGAAAACTTCTGGAG 14282 | ||| |||| |||| | || ||| ||| || |||||| || | | || Sbjct 30100521 GGACAGGCAATGTCTATCAATCTGCAATATTTGCCGGTTATAGT--GAGGCTTACGCCAG 30100464 Query 14283 CGCAA--GCTGAgaaattgctgaaaaaagttgaaataaaaaactccataaacgcagaaat 14340 ||| ||| ||||| || |||| | || |||| | |||| | |||||| Sbjct 30100463 AACAACCGCTAGTAAATTACTAGAAAATGCAAGCATTAAAACGTTCATACAAACAGAAAC 30100404 Query 14341 tgaaaaaatGCACAACGAGAACATCATGGACGCCAAGGAAGCCTTATCCATTTTATCCGA 14400 |||| |||||| | |||||||| || ||||| || ||| | || ||| | || || Sbjct 30100403 CAAAAAGATGCACGATGAGAACATTTTGAGTGCCAAAGAGGCCCTTTCAATTCTTTCAGA 30100344 Query 14401 TATTGCAAGGGGCAAGCGTGATGAAGAAATAGTCATGATGAACCCAGTTAGTGGCGAAGT 14460 |||||||| || ||||| ||||||| | | |||||||| || || | ||| || || Sbjct 30100343 CATTGCAAGAGGAAAGCGACTTGAAGAAGTTTTGATGATGAATCCGGTAACTGGTGAGGT 30100284 Query 14461 TGAGCGTCTCAGAAAGAAAGCTGATAATAACACCGTTATCAAGGCTATCACCGAAATTCT 14520 || | | | || || || ||||||||||| |||||||| || || | ||||| | Sbjct 30100283 GGACAGAGTTACGAAAAAGGCGGATAATAACACAGTTATCAAAGCGATAGCTGAAATATT 30100224 Query 14521 GAAACGCTATCCAACAACTAAACAAGCCGAGAAGTTACAGCTTGAAATAGAAAAACTCAA 14580 |||||| ||||| || |||||||||| || || | ||||||||||||| ||||| || Sbjct 30100223 GAAACGATATCCGACTGCTAAACAAGCTGAAAAACTTGAGCTTGAAATAGAGAAACTTAA 30100164 Query 14581 ATCTCAAATTGGTGGAGATGAAGGACAAGATGAAAAGATAGCTG-GCTTCCTAAACCTTA 14639 ||||||||||||| ||||| | || || || ||| | | | | || |||| ||| Sbjct 30100163 ATCTCAAATTGGTATGGATGACGAGCATGACGATAAGCTTGTAGAGTTTGCTAAGGCTT- 30100105 Query 14640 TCAAAGGAGCTGTAAACAATGGACTTGAGTAAGCTCTATACCAAGCGACAGTTAGAAGTG 14699 | | ||| ||| | || ||| |||||| || | ||||| ||| | |||| Sbjct 30100104 TGAGAGGTGCTTTTAAT----GACA--AGTAAGTTC-ACACCAAA--ACAAGAACAAGTC 30100054 Query 14700 CTTAATTACATCTGGAATCACGACTGGTTCATCTGTGGGCTTCATGGAGCTAAACGAGCA 14759 |||| | | || | |||| || || || || | ||||| || || || || Sbjct 30100053 CTTAGACGAGTTTTAAACGATGACTTCTTTATTTGCGGTTTGCATGGTGCAAAGCGTTCA 30099994 Query 14760 GGTAAGACCGTTGTTAACAATGATACATTTGTAACCGAATTAAGTCGTGTCAGAAAAATT 14819 |||||||| ||| | || ||| || | | ||| | | | || |||| ||| Sbjct 30099993 GGTAAGACTGTTTTGAATAATATGGTCTTCCTGAATGAAATTGATAGAGTTAGAACAATA 30099934 Query 14820 GCTGACCGATTAGGTGTAGATGAGCCTATTTACATTTTGGCAGGTACGTCTTCAACAGCA 14879 ||||| |||| | ||||| || || || |||||||| || ||||||||||| | Sbjct 30099933 GCTGATAAGTTAGACATTGATGAACCGATGTATATTTTGGCTGGGACGTCTTCAACTTCG 30099874 Query 14880 ATTCAGAATAACGTCTTACAAGAACTTTATAACAAGTATGGCTTTGAACCAAAATACGAT 14939 || || ||||| | | |||||||| ||||||| || || |||| |||||||| || Sbjct 30099873 ATACAAAATAATATTATCCAAGAACTCTATAACATGTTTGATATTGAGCCAAAATATGAC 30099814 Query 14940 AAACATGGCTCTTTCGTTTTCTGTGGTGTCAAAGTCGTGCAGGTCTATACTGGCTCTATA 14999 ||||| || | || | | || || ||||| || | || || |||||||| || || Sbjct 30099813 AAACACGGAGCGTTTACTCTTTGCGGAGTCAAGGTTATTCAAGTTTATACTGGTTCAATT 30099754 Query 15000 TCTGGTCTTAAACGTGCCCGTGGTTTTACAGCGTTCGGAGCTTATGTCAACGAAGCGTCG 15059 || ||| | ||||| || |||||||| ||||| || ||||| ||||| ||||| || ||| Sbjct 30099753 TCAGGTTTAAAACGAGCTCGTGGTTTCACAGCTTTTGGAGCCTATGTGAACGAGGCATCG 30099694 Query 15060 CTAGCCAATGAGTTTGTTTTTAAAGAGATTATCTCACGCTGTTCTGGTGATGGTGCTCGT 15119 | |||||||| || || ||||| || |||||||| ||||| || || ||||| || Sbjct 30099693 TTGGCCAATGAACAAGTGTTCAAAGAAATCATCTCACGTTGTTCGGGAGAGGGTGCACGG 30099634 Query 15120 GTTGTTTGGGATAGTAACCCAGATAATCCTAATCACTGGCTTAACCGAGATTATATCGGT 15179 |||||||||||||||||||||| | || | |||||||| | || ||||||||| Sbjct 30099633 ATTGTTTGGGATAGTAACCCAGACATCCCGACCCACTGGCTCAGACGGGATTATATCAAC 30099574 Query 15180 AAGAACGACGGAAAGATTATAGATTTTAGTTTCAAGCTAGATGATAATACTTTCTTATCG 15239 ||||| | ||| ||||| ||| ||||||||||||||||||||| ||| | || Sbjct 30099573 TCTGGCGACGATATGATCATAGACTTTCATTTCAAGCTAGATGATAATACATTCATGTCT 30099514 Query 15240 AAACGCTATATCGATTCTATCAAGGCAGCTACGCCAAAGGGTAAGTTCTACTCTAGAGAT 15299 | | || ||| ||||||| || || ||| ||| || || |||| Sbjct 30099513 GACAGATACCGCGAAAATATCAAGAATGCCACACCAGCTGGTGTATTTTATGACCGAGAC 30099454 Query 15300 ATCTTAGGACTCTGGACAGTAGCAGAGGGAGCTATCTACGCTGATTATGACAGCAAGATA 15359 ||| | || | ||| | | ||||| | | | || ||||| | ||| ||| | Sbjct 30099453 ATCCTTGGTTTGTGGGCGACTGGTGAGGGCGTTGTATATCGTGATTTT---AGCGAGA-A 30099398 Query 15360 CACG-TAGTTGATGAGTTGCCAGA------AATGAAACGCTATTTTGGGGGCATTGACTG 15412 | | | || ||| | | ||||| || ||| |||| ||| | ||||||| Sbjct 30099397 TATGTTTGTGGATAACGTACCAGAAGATATAACTAAAGTCTATGCTGGTG---TTGACTG 30099341 Query 15413 GGGATATACTCACTACGGATCTATCGTGATTGTTGGTGAAGGAGTAGATAAT--AACTTC 15470 ||| ||| |||| || ||||| || |||| || ||| ||| | | || Sbjct 30099340 GGGGTATGAACACTTTGGCTCTATTGTAGTTGTCGGAGAAACCTCAGACGGTTCAGTTTA 30099281 Query 15471 TATCTTGTCGATGGCGTAGCAGCACAATTCAAAGAGATTGACTGGTGGGTAGAGCAAGC- 15529 ||||| | || | || |||| |||||||||||||| |||||||| | || Sbjct 30099280 TATCT--TAGAGGAACACGCTCATCAATACAAAGAGATTGACTTTTGGGTAGACCTTGCT 30099223 Query 15530 -AAGGAAGCTTACTGGCATCTATGGTAACATTCCGTTTTATGCTGATAGTGCCCGACCTG 15588 ||| || | | | ||||| || ||| |||||| || ||||| || ||||||| Sbjct 30099222 AAAGAAATCAAAAAACGA--TATGGCAATATTACGTTTTGGGCAGATAGCGCACGACCTG 30099165 Query 15589 AACACGTAGCAAGGTTTGAAAACGAAGGATT--TGATATTAGCAACGCTAACAAGTCAGT 15646 ||||||| || || ||| | | || | | || ||| ||||||||||| | || Sbjct 30099164 AACACGTTGCTAGATTTCAGAGAGAGCAACTGAAGACATT--TAACGCTAACAAAGCGGT 30099107 Query 15647 CATAGCTGGTATCGA 15661 | | |||||||||| Sbjct 30099106 CTTGTCTGGTATCGA 30099092 Score = 131 bits (144), Expect = 5e-26 Identities = 141/187 (75%), Gaps = 0/187 (0%) Strand=Plus/Minus Query 8343 CTTTCAGTCTTTCGGTTAACCGTCATTTCAAAAATGATAACGGAGAGCGTGAAACTGACT 8402 |||| | |||| | || |||||| || || | | | || || || ||||| |||| | Sbjct 59386079 CTTTTACTCTTGCAGTAAACCGTACGTTTAAGAGTCAAAATGGCGAACGTGAGGCTGATT 59386020 Query 8403 TTATCAATTGCGTTATCTGGAGACAGCAAGCTGAAAACTTGGCTAACTGGGCTAAAAAAG 8462 |||||||| ||| || ||| | || || |||||||| | ||||||||||||||||||| Sbjct 59386019 TTATCAATGTCGTGATGTGGCGTCAACAGGCTGAAAATCTTGCTAACTGGGCTAAAAAAG 59385960 Query 8463 GTGCATTGATTGGCATTACTGGACGTATTCAGACTCGTAGCTATGAAAATCAGCAAGGTC 8522 | | | || || || || || ||||| ||||||||||| || || || |||||||| | Sbjct 59385959 GCTCTCTTATCGGGATCACAGGCCGTATCCAGACTCGTAGTTACGATAACCAGCAAGGAC 59385900 Query 8523 AACGTGT 8529 ||||||| Sbjct 59385899 AACGTGT 59385893 Score = 100 bits (110), Expect = 8e-17 Identities = 123/167 (74%), Gaps = 6/167 (4%) Strand=Plus/Minus Query 2951 TATAAAGATTGGTTCCCACGTATGACTGAATATGGTTTTACAGATGGTGAAGACTTTAGC 3010 ||||| || ||||| || || ||| ||||| || ||| | || |||| ||| | Sbjct 61811270 TATAACGACTGGTTTCCGCGCATGCTCGAATACGGCTTTGAGCAGGGCAAAGAGTTTTAC 61811211 Query 3011 TCATTTTTGAGCAAAA-----GTACCGG-AGGGCGACCAAGTCAAGACCACATCATCAAA 3064 |||||||||||||||| | || || ||| || || | |||| |||||||||| Sbjct 61811210 TCATTTTTGAGCAAAACCCCCGAACAGGCAGGACGTCCCCGCGAAGATCACATCATCAGC 61811151 Query 3065 CTAGACATGGCAAAAGAAATTGCAATGATTCAACGTACCGATAAAGG 3111 || |||||||| |||||||| || |||||||| || ||||| ||||| Sbjct 61811150 CTGGACATGGCCAAAGAAATCGCCATGATTCAGCGCACCGAAAAAGG 61811104 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 145817556710400