Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20hellerii_20[genbank_20GCA_5F001443345.1_202015-11-13] 25 sequences; 733,802,474 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq25 149 7e-31 seq20 96.9 4e-15 seq13 82.4 9e-11 >seq25 Length=32766887 Score = 149 bits (164), Expect = 7e-31 Identities = 952/1501 (63%), Gaps = 62/1501 (4%) Strand=Plus/Minus Query 75212 CCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTGATTCTGTC 75271 || ||| ||||| ||||| |||| | | || ||||||||| |||||| || | | | Sbjct 10521389 CCGCAGCACATGCTCATGAGGGTGTCGGTTGGGATCCACGGGCGAGACATCGACGCCGCC 10521330 Query 75272 TTGGAGACATACGACAAGATGTCCCA-AGGTATGTTCATTCACGCAACACCAACCCTCTT 75330 | ||||| ||| || |||| | | || ||||| ||||| | || |||||||| Sbjct 10521329 GTCGAGACCTACAACCTCCTGTCGGAGAAGTG-GTTCACCCACGCCTCTCCGACCCTCTT 10521271 Query 75331 CAATGCTGGTACACCAA--GACCGCAGATGTCCAGTTGCTTCCTTATCGCCAACAAGGAG 75388 ||| || || || ||| | |||||| |||||||||||||||| |||||| ||||| Sbjct 10521270 CAACGCCGGGAC--CAACCGGCCGCAGCTGTCCAGTTGCTTCCTGCTCGCCATGAAGGAC 10521213 Query 75389 GACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCT 75448 ||| ||| | || ||||| | || || | | |||| |||| || || |||| ||| Sbjct 10521212 GACAGCATCGAAGGCATCTACGACACCCTGAAGCAGTGCGCGCTCATTTCCAAGTCCGCT 10521153 Query 75449 GGGGGTATTGG---------GATGCACATCC-AT-GATGTGAGAGCCAATAAATCTCGTA 75497 || || || || || ||||| || || | || ||| || ||| | Sbjct 10521152 GGCGGGATCGGCGTGGCGGTGAGCTGCATCCGATCGACGGGA-AGC---TACATCGC--- 10521100 Query 75498 TTCGGGGGACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCA 75557 || || || || | || | || | | || ||||| | || | ||| || Sbjct 10521099 ----AGGCACCAACGGCAACTCCAACGGGTTGGTGCCGATGCTGAGAGTTTACAACAACA 10521044 Query 75558 CAGCGCGCTATGTAAATCAAGCGGGGCGTC-GCAAG------GGGTCCATCGCGGTCTAC 75610 | || || || || | || ||||| | |||| ||| || |||| | || Sbjct 10521043 CCGCTCGGTACGTTGACCA----GGGCGGCAACAAGAGACCCGGGGCCTTCGCCATGTAT 10520988 Query 75611 TTGGAACCATGGCATGCCGATATCATGGAGTTCCTTGAG-TTACGACTCAACCAAGGTGA 75669 |||| |||||||| ||| | | || ||||| ||| | | || ||| ||| | Sbjct 10520987 CTGGAGCCATGGCACTTCGACGTGTTCGACTTCCTGGAGCTGAAGA-AGAACACAGGAAA 10520929 Query 75670 CGAAGAGGCTCGGTGTAGAGATCTCTTTTCATCCCTGTGGATTCCAGACCTTTTCATGAA 75729 || ||| | ||||| || || | || ||||||| || ||||| |||||||| Sbjct 10520928 GGAGGAGCAGAGAGCCAGAGACCTTTTCTACGCCTTGTGGATCCCTGACCTGTTCATGAA 10520869 Query 75730 GCGGGT--TGAGGAGGGTGGTCAATGGTCTCTTTTCTGTCCAGACAAGGCACCAGGTCTC 75787 | | || ||| | || | ||||| | | ||||| | || || || || Sbjct 10520868 GAGAGTGGAGAGCAACCAGG--ACTGGTCCTTGATGTGTCCCAGCGAGTGTCCTGGGCTG 10520811 Query 75788 TCCGA-CGCGGTGGGTGAGGAGTTTGAAGCCCTCTACACAAAGTATGAAGAGGAGGGTAG 75846 ||| || | ||| |||||||| || |||||||| || ||||| |||| || || Sbjct 10520810 GACGAGTGCTG-GGGAGAGGAGTTCGAGAAGCTCTACACCAAATATGAGAAGGAAGGGAG 10520752 Query 75847 AGCCAATGCGACTGTACCAGCCGCCG-ATGTTTGGAAGGCTATTCTCAAATCACAGACGG 75905 || || | || || ||| | | | ||| | || || || | || ||||| | Sbjct 10520751 AGTGAA-AAGGGTGGTGAAGGCGCAGCAGCTCTGGTACGCCATCATCGAGTCCCAGACCG 10520693 Query 75906 AGACTGGAACACCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGA 75965 | || || || || || ||||| |||||||| ||||| |||| |||||| ||||| ||| Sbjct 10520692 AAACCGGGACCCCCTACATGCTCTACAAGGACGCTTGCAACAGGAAGAGCAACCAGCAGA 10520633 Query 75966 ATTTGGGAACAATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAGG 76025 | |||| || |||||| || || || |||||||| | | |||||||| |||| Sbjct 10520632 ACCTGGGCACCATCAAGTGCAGCAACCTCTGCACGGAGGTGGTGGAGTACACCAGCAAGG 10520573 Query 76026 ATGAGACGGCTGTTTGCAATTTGGCATCAATCGCCCTTCCAAAGTATGTCAATGAAGAGA 76085 | ||| ||| || ||||| |||| || |||||||| | ||| |||| |||| Sbjct 10520572 ACGAGGTGGCCGTCTGCAACCTGGCCTCCATCGCCCTCAACATGTACGTCACGCCAGAG- 10520514 Query 76086 CTCGCACTTTTGATTATGAAAAACTTCATGAAATCACAAAGATTGTTACCAAAAATCTAA 76145 || ||||| || | | || || |||| ||| | | ||||| || | Sbjct 10520513 --CGGACTTTCGACTTCAAGAAGCTGGCCTCCGTCACCAAGGTAATCGTGAAAAACCTCA 10520456 Query 76146 ACCGAGTCATTGACAGAAATTTTTATCCCGTT-GAGACTGCGCGAAAGTCTAATATGCGA 76204 || |||| |||| || | || || ||| || || | | || || | ||| Sbjct 10520455 ACAAGATCATCGACATCAACTACTACCCGGTTCCCGAAGCCGAG-ACTTCCAACAAGCGC 10520397 Query 76205 CACAGACCTATTGGTTTGGGTGTTCAAGGTCTCGCGGATGTATTTATTTTG-TGCCGCTA 76263 ||||| || || || | || || || ||||| || || | || || || ||| || | Sbjct 10520396 CACAGGCCGATCGGGATCGGCGTCCAGGGTCTGGCCGACGCCTTCATCCTGATGCGGC-A 10520338 Query 76264 CGCATTTGATTCAGATGAAGCCAAGGAGATGAATGCTCGTATCTTTGAAACCATGTATCA 76323 | | || || ||||| || | | || | || || || ||||| || || Sbjct 10520337 CCCTTTCGAAAGTCCCGAAGCTCAGCTGCTCAACATCCAGATGTTCGAGACCATCTACCA 10520278 Query 76324 CGCATCCCTGGAGGCGAGTTGTGAATTGGCTGAAGCCCAAGGTTCCTATGAGACATTTGA 76383 ||| |||||||||| || || || | || | || | || |||| ||||| | || Sbjct 10520277 CGCCGCCCTGGAGGCCAGCTGCGAGCTCGCCGCAGAGCTCGGCCCCTACGAGACGTACGA 10520218 Query 76384 GGGTTCTCCCGCGTC-CCAAGGG-GTGCTTCAGTTTGATATGTGGGAAGGTGAAACCAAG 76441 ||| ||| | |||| |||||| | || |||| || ||||||| || || || | Sbjct 10520217 GGG--CTCGCCCGTCAGCAAGGGCATCCTCCAGTACGACATGTGGG-AGAAGACGCCGAC 10520161 Query 76442 C-TCAACTACGACTGGGATGTTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAG 76500 | | | |||||| | | || |||||| ||| | | || | | ||||| Sbjct 10520160 CGACCTTTGGGACTGGAAGCTGCTGAAGGAAAAGATCGGCAAACACGGCGTGAGGAACAG 10520101 Query 76501 TCTTTTGATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATG 76560 || || |||| || ||||| || || |||||||| || ||| |||| || || || | Sbjct 10520100 CCTGCTGCTGGCGCCCATGCCCACGGCGTCCACCGCCCAGATCCTGGGCAACAACGAGTC 10520041 Query 76561 CTTTGAACCATACACAACAAACATCTACCTGAGAAGAACCCTCGCAGGTGAGTTTGTCAT 76620 | | || | ||||| | ||||||||| | || || | || ||||| || Sbjct 10520040 CATCGAGGCGTACACCAGCAACATCTACACCCGCAGGGTGCTGTCCGGAGAGTTCCAGAT 10519981 Query 76621 TGTCAACAAGCACCTCGTCAATGACCTCAAGAAGATTGGTCTCTGGTCCAAGGATATGAA 76680 |||||| |||||| |||| || || | | || || || ||| | |||| ||||| Sbjct 10519980 CGTCAACCCTCACCTCCTCAAGGATCTGACGGAGCGCGGCCTGTGGAACGAGGAGATGAA 10519921 Query 76681 G 76681 | Sbjct 10519920 G 10519920 >seq20 Length=26302745 Score = 96.9 bits (106), Expect = 4e-15 Identities = 101/133 (76%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 65077 GAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTCTGCGCT 65136 ||||| ||| | || ||||| |||||||| || |||||||| || |||||| ||| Sbjct 12394202 GAGCGTCTTGTGGCTTTTGCAGCAGTGGAGGGGATTTTCTTCTCAGGCTCATTCGCTGCT 12394143 Query 65137 ATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGAACTTATT 65196 || || ||| |||||||| | || |||||||||||||| || ||| || ||||| ||| Sbjct 12394142 ATCTACTGGCTGAAGAAGAGAGGCCTCATGCCAGGCCTTACCTACTCCAACGAACTCATT 12394083 Query 65197 TCCCGAGATGAGG 65209 | | ||||||| Sbjct 12394082 AGCAGGGATGAGG 12394070 >seq13 Length=27080333 Score = 82.4 bits (90), Expect = 9e-11 Identities = 74/93 (80%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 76496 AACAGTCTTTTGATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAAT 76555 |||||||| | |||| |||||||| ||||| ||||| || || ||||||||||| || Sbjct 15277224 AACAGTCTGCTTTTGGCCCCAATGCCCACAGCTTCCACTGCCCAGATCTTGGGTAACAAC 15277165 Query 76556 GAATGCTTTGAACCATACACAACAAACATCTAC 76588 || | | |||| ||||||||| ||||||||| Sbjct 15277164 GAGTCCATTGAGGCATACACAAGCAACATCTAC 15277132 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596569413572000