Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20hellerii_20[genbank_20GCA_5F001443345.1_202015-11-13] 25 sequences; 733,802,474 total letters Query= NC_021299.1 Length=80955 Score E Sequences producing significant alignments: (Bits) Value seq18 131 9e-26 >seq18 Length=80077792 Score = 131 bits (144), Expect = 9e-26 Identities = 296/447 (66%), Gaps = 41/447 (9%) Strand=Plus/Minus Query 62014 GAGCTGGACGTGGACCTGTCTCACTCGCCGAAGTGGATGGAGCAGCTGGGATCTCTCGGC 62073 ||||||| ||||| |||| || |||||||||||| ||||| | || || | || Sbjct 70158326 GAGCTGGGTGTGGATTTGTCGCATTCGCCGAAGTGGCGTCAGCAGTTAGGTTCGTTGGGT 70158267 Query 62074 GGCGGCAACCACTTCATCGAGTTGTGTGTCGACGCCGAGGACAACGTGTGGCTGTTCCTG 62133 || || ||||| ||||| || |||||| | |||| ||||| ||||||| |||||||| Sbjct 70158266 GGTGGTAACCATTTCATTGAATTGTGTTTGGACGAGCAGGACCGCGTGTGGATGTTCCTG 70158207 Query 62134 CACTCCGGTTCTCGCGGAGTCGGCAACAAGATCGCGCAGCGCCACATCAAGGCGGCTGTG 62193 ||||||||||| ||||| || ||||||||||| || || ||||| ||| Sbjct 70158206 CACTCCGGTTCCCGCGGTGTGGGCAACAAGATTGCAAAGAAGCACATTAAG--------- 70158156 Query 62194 GAGTACTGCGCAGAGGGTGCGCG-GCTGGCTGGCTCCGATTCGGTTCGCGCCCGCTACCG 62252 | ||| ||| | || | | || | ||| | | ||| | Sbjct 70158155 ----ATTGCCCAGCGTCTGTGTGAGCAG--TGG-------TGGATTCCC----------- 70158120 Query 62253 ACTCCCTCACCGAGATCTCGCGTTCCTGGACGAGGGAACGTGGATGTTCGACACGTACAT 62312 || || || ||| | |||| | ||| |||| || |||| | | || | Sbjct 70158119 -CTGCCCAACAAGGATTTGGCGTACTTGGTGCAGGGGACCCCAGAGTTCAAGGCTTATCT 70158061 Query 62313 CAAGGAGCTGGAGTGGGCCCAGCGGTTCGCGTACCTGAACCGTGCGGAGATGATGGACCG 62372 |||| || ||||||| |||||||| || | ||| ||||||| ||| ||||||||||| Sbjct 70158060 GCAGGATTTGAAGTGGGCGCAGCGGTTTGCCTTCCTCAACCGTGAGGAAATGATGGACCG 70158001 Query 62373 CTTCGTCCAGGTGTTCGCGTGGTGGATGGGCGTCGAGGCTCAGCGTGTCGAGGTGGAGCG 62432 |||| | | | | || ||||| | ||| ||| ||| ||| ||||||| Sbjct 70158000 TTTCGCTGACTGCCTGGAGGAGTTCATGGG---CCAGG---AGCTTGTGGAGTTGGAGCG 70157947 Query 62433 CATCAACTGCCACCACAACTACACGGT 62459 ||| |||||||||||||| |||||||| Sbjct 70157946 CATTAACTGCCACCACAATTACACGGT 70157920 Score = 122 bits (134), Expect = 5e-23 Identities = 148/199 (74%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 61638 CTTCGCTTCGGAGATCGACCAAGCGACGATTGACCAAGCCAAGCAGATCGCGGAGATGCC 61697 ||| || || ||| | || || | ||| |||| |||||| ||||| | || | |||| Sbjct 74070621 CTTTGCCTCAGAGTTGGAGGAATCCACGCTTGAGCAAGCCCAGCAGCTGGCAAAACTGCC 74070680 Query 61698 GTTCATCTACCCGCACCTGGCGCTGATGCCGGATGCCCACTC-GGGCAAGGGATCTGCGG 61756 ||| || |||||||| | ||||| ||||| || |||||| | ||| |||| || ||| Sbjct 74070681 GTTTATTTACCCGCATGTTGCGCTCATGCCCGACGCCCACACCGGGTTAGGG-TCGTCGG 74070739 Query 61757 TCGGCACCGTCATCCCCACCAAGGGCGCTGTCATTCCGGCCGCTGTTGGGGTGGACATCG 61816 | || ||||| || ||||| | || || ||||| ||||| || || || ||||||| Sbjct 74070740 TGGGAACCGTGTTCGGCACCATTGATGCCGTGATTCCCGCCGCCGTGGGCGTTGACATCG 74070799 Query 61817 GCTGCGGCATGATTGCCGT 61835 | ||||||||||||||||| Sbjct 74070800 GATGCGGCATGATTGCCGT 74070818 Score = 111 bits (122), Expect = 8e-20 Identities = 213/314 (68%), Gaps = 0/314 (0%) Strand=Plus/Minus Query 59890 GAGGAGCTGAAGGACTACACGTACGGTCTGCTACTCGAGTTGTACGACAACGAGATTGAG 59949 || || || || || | ||| |||| ||| || | || ||||||||||||| ||| | Sbjct 49727438 GAAGAACTCAAAGAGTTCACATACGATCTTCTCATGGAACTGTACGACAACGAAATTAAA 49727379 Query 59950 TACACGCAGGATCTGTACGACGGCGTGGGACTGACTGAGGATGTCAAGATGTTCCTGCGC 60009 ||||| || || | || || | | ||| |||||| ||||| | ||||||| Sbjct 49727378 TACACACAAGAAATCTATGATGATCTTGGATGGACTGAAGATGTTCGGCGGTTCCTGAAA 49727319 Query 60010 TACAACGCCAACAAGGCGCTGATGAATCTCGGCTACGAGGCGCTGTTCCCGCGCGACGAA 60069 |||||||| ||||| || |||| |||||||| || || | | | |||||| || ||| Sbjct 49727318 TACAACGCGAACAAAGCCCTGAATAATCTCGGATATGAAGGGTTATTCCCGGCGGATGAA 49727259 Query 60070 ACCGAGGTGAATGCGGCGATCTTGGCGGCACTGTCCCCTGGCGGGGACGAGAACCACGAC 60129 || ||| ||| || | | |||| ||||| | || | || ||||| ||| Sbjct 49727258 ACACGGGTTTCCCCGGAAATTCTTTCTTCACTATCCCCGGACGCTAATGAAAACCATGAC 49727199 Query 60130 TTCTTCTCGGGCTCTGGCAGCACGTATGTGATTGGCAAGGCTGAGGTTACGGAAGACGAG 60189 |||||||| || || || | || || |||||||| ||||| || ||||| || Sbjct 49727198 TTCTTCTCTGGTTCCGGATCTTCCTACGTTATTGGCAAAGCTGAATCAACTGAAGATGAT 49727139 Query 60190 GATTGGGACTTCTA 60203 || ||||| || || Sbjct 49727138 GACTGGGATTTTTA 49727125 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 258931121106900