Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20hellerii_20[genbank_20GCA_5F001443345.1_202015-11-13] 25 sequences; 733,802,474 total letters Query= NC_021347.1 Length=142563 Score E Sequences producing significant alignments: (Bits) Value seq18 210 2e-49 >seq18 Length=80077792 Score = 210 bits (232), Expect = 2e-49 Identities = 543/817 (66%), Gaps = 13/817 (2%) Strand=Plus/Plus Query 41906 AGTCCATGATCGGCCCGATTCAGCTCAAGCTGCGCTACCAGGGCATCACCCGCAACGTCC 41965 |||||||||| || || || ||||| |||||||| || ||||| || |||||||| | Sbjct 39945127 AGTCCATGATTGGGCCTATCCAGCTGAAGCTGCGTTATCAGGGTATTGTGCGCAACGTTC 39945186 Query 41966 TCCTCGAGGACGCGCTGGTGCCCGGTGTGCCCGTCCAGTACGACGTCCTCGACGACGCTG 42025 | | || || || ||| ||| ||||| || || ||||||||||| || ||| | | Sbjct 39945187 TTTTGGAAGATGCTTTGGAGCCGGGTGTTCCGGTTCAGTACGACGTTCTTGACCAGTGGG 39945246 Query 42026 GCCACGCGTACATCCTGCACGGCAACGAGGGCGAGATCCGCATCACGCCCTTCGAGGGCA 42085 |||| || || |||||||| || || || || | ||| | || |||| | Sbjct 39945247 GCCAGGCTTATATCCTGCATTCCACTGATGGTGAAGTAAAGGTCAAGATGTTTGAGGCAA 39945306 Query 42086 AGCGCGTCGACGTGTCGCTGTTCCGCATCGCCACGTTCCCGACGATCAAGAAGGAGGATC 42145 |||| || | || ||||||||||| || | ||||||| | || || |||||| Sbjct 39945307 AGCGTGTGCAGGTTGATCTGTTCCGCATTGCTGCTTTCCCGAAGGTCCGTAAAGAGGATG 39945366 Query 42146 TCTACTACCTCCGCTCGAACGTCGTCGAGTACGCGCAGGACATGTCCAAGCAGTCCATCA 42205 | | |||| | || || || ||||| || ||||| ||| || | | || | Sbjct 39945367 TTTGGATGGCCCGCGCAAATGTTGTTGAGTATGCTCAGGAAGAGTCTAAAGAAGCTATTA 39945426 Query 42206 TGCAGCAGGAGGACGGCCGTCTGGTCCAGCTGCTCGAGGCCGCCGTGCTGCAGTACCGCA 42265 || ||| ||| ||| ||||| || ||| | || | || | ||||| || | Sbjct 39945427 TGAAGCTGGAAGACTCGCGTCTTGTTACTCTGTTGGAAGGTGCTATTTCGCAGTTCC--A 39945484 Query 42266 TGGT--CGACTCGGCTGCCGACCCGACCGGCGGCTCGCTGCCGAACGAGATCACCGTCGC 42323 | | | || ||| ||| | || || || | |||||||||| || ||| |||| Sbjct 39945485 GGCTAACAACCCGGATGCT---CGTACTGGTGGTGCTTTGCCGAACGAAATTACCATCGC 39945541 Query 42324 GGGCACCAGCCTGTCGCCGAACGATCTCTACACGGCCGTGAGCTA-CACGGACCAGCGCC 42382 | | | | | | |||||||| || | || || ||| | |||| || | Sbjct 39945542 TTCCGACTACATTACCGCTAACGATCTGTATTCCGCTGTTT-CTATCCCGGATACCCGTC 39945600 Query 42383 AGTTGGACAGCTCGCGCCTCCTGTGCAACCCGCAGGAGTACCGCGACTTCTACCGCTGGG 42442 || |||| || ||| | ||||| || | | || ||||| |||||||||||||||| Sbjct 39945601 AGCTGGATTCTTCCCGCATTCTGTGTAATACCCGTGATTACCGTGACTTCTACCGCTGGG 39945660 Query 42443 ACATCAACACGACCGGTTGGGCCTTCAAGGACTCCGTCGTGGCTGGCGAGCGCATCGTCC 42502 | |||||| || |||||||| ||||| || || || ||||| || ||| | Sbjct 39945661 AAATCAACCAAACTGGTTGGGCATTCAAAGATAATGTTGTTGCTGGTGAAACTATCACCA 39945720 Query 42503 AGTTCGGTGAGTTCCAGATCGGCAAGTCGATCATCA-TCCCGCGTGGCACCACGTTCCTC 42561 |||||||| |||||||| || || || |||| ||| ||| ||||| | || || Sbjct 39945721 CTTTCGGTGAATTCCAGATTGGTAAATCCCCAATCATTCCTGCG-GGCACAATGTATCTT 39945779 Query 42562 ACCCCGGAGCCGCAGTTCCTCGGCGTCTTCCCGGTGATGTACTCGCTCGACGTCGAGGAG 42621 || || | || | ||||| || || | || ||||||||||| || || || ||||| Sbjct 39945780 ACACCCGCTCCTGAATTCCTGGGAGTTATGCCAGTGATGTACTCACTGGATGTGGAGGAA 39945839 Query 42622 AACCCTCAGGTCGAGCAGTTCCACAAGGGCTGGGTCATGGACGAGCTGGTCGGCATGGCC 42681 ||| |||| || | ||||| | || ||||| ||||| || || |||||||||| Sbjct 39945840 AACAACAAGGTTGAAGACTTCCATTACGGATGGGTTATGGATGAACTTATCGGCATGGCT 39945899 Query 42682 GTGCTCAAC-CCGCGCGGCATTGTGGTTTTGCGCAAG 42717 | |||||| |||| || ||||||| | |||| ||| Sbjct 39945900 ATTCTCAACGCCGC-TGGTATTGTGGCTCTGCGTAAG 39945935 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 456073457477000