Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20hellerii_20[genbank_20GCA_5F001443345.1_202015-11-13] 25 sequences; 733,802,474 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq25 188 6e-43 seq13 102 7e-17 seq16 100 3e-16 seq18 84.2 2e-11 >seq25 Length=32766887 Score = 188 bits (208), Expect = 6e-43 Identities = 974/1528 (64%), Gaps = 53/1528 (3%) Strand=Plus/Plus Query 138501 GTTTATGACCTGAAATTCACCGGCCAATACTCGACGAACGTAAATGTTGTTGGTGAAAGG 138560 ||| | || ||| || || |||| || || | || ||| |||||| ||||| | | Sbjct 10519974 GTTGACGATCTGGAACTCTCCGGACAGCACCCTGCGGGTGTAGATGTTGCTGGTGTACGC 10520033 Query 138561 CTCAAACGATTCGTTGTTTCCCAGAATCTGAGCCGTGGTCGCGGTCGGCATGTACGCCAC 138620 ||| | || |||||||| ||||| ||||| || |||| ||| || |||||| ||||| Sbjct 10520034 CTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGACGCCGTGGGCATGGGCGCCAG 10520093 Query 138621 CAAAAGAGAATTCCGTAAACCGTGAAGCTTGATTCGTTCCTTGAGCGACGACCAGTCCCA 138680 || || |||| | ||||| ||| |||||| ||| | ||||||||| Sbjct 10520094 CAGCAGGCTGTTCCTCACGCCGTGTTTGCCGATCTTTTCCTTCAGCAGCTTCCAGTCCCA 10520153 Query 138681 CAAATCGCTAGGTTTTTTGTTCCACATATCGTACTGTAACATTCCCAAACTTGCGGGACT 138740 | ||| | || | || | |||||| |||||||| | || ||| || |||| Sbjct 10520154 AAGGTCGGTCGGCGTCTTCTCCCACATGTCGTACTGGAGGATGCCCTTGCTGACGGGCGA 10520213 Query 138741 GCCTTCGTACGAATCGTATACACCAAACTCTTGCGCCAACTCGTTGCTCGCCTCGAGCGC 138800 ||| ||||||| ||||| || | |||| || | |||| ||| ||||| || || Sbjct 10520214 GCCCTCGTACGTCTCGTAGGGGCCGAGCTCTGCGGCGAGCTCGCAGCTGGCCTCCAGGGC 10520273 Query 138801 ACCATAGTAAATAGTTTCGGCAATCTGCTGATTGAGCAATCGGGCCTCGGCGCTCTCGTA 138860 | | ||| || || ||| ||||| ||||||| | || |||| || ||| | Sbjct 10520274 GGCGTGGTAGATGGTCTCGAACATCTGGATGTTGAGCAGCTGAGCTTCGGGACTTTCGAA 10520333 Query 138861 CGGCATGCGGAGCATCGTGAACGCGTCGGCCAGCCCTTGCACGCCCACTCCGACAGGGCG 138920 || || | || |||| ||||||||||| || || ||||| | |||| || | Sbjct 10520334 AGGGTGCCGCATCAGGATGAAGGCGTCGGCCAGACCCTGGACGCCGATCCCGATCGGCCT 10520393 Query 138921 ATGGCGCAGATTTGACGCTTTTGCGGCTTCG---ATAGGATAATAGTTTACATCGATGAT 138977 |||||| || || | | |||||||| | || || ||||| | |||||||| Sbjct 10520394 GTGGCGCTTGTTGGAAG---TCTCGGCTTCGGGAACCGGGTAGTAGTTGATGTCGATGAT 10520450 Query 138978 TTTGTTTAAATTTCGCACGACCACCTTAGT--CGTATGCTTTAATCGTTCAAAATCGTAT 139035 ||||| | ||| ||||| ||||| || || | || || | || ||| | Sbjct 10520451 CTTGTTGAGGTTTTTCACGATTACCTTGGTGACGGAGGCCAGCTTC--TTGAAGTCGAAA 10520508 Query 139036 GTGCCCCCGTTGTCGTCGACGACGTCGACAAATTTGTTGACACAAATCGAGGCTATGTTG 139095 || || | || ||| ||||| ||| |||||| || ||||| | |||| Sbjct 10520509 GT--CCGCTCTGGCGT----GACGT--ACA----TGTTGAGGGCGATGGAGGCCAGGTTG 10520556 Query 139096 CACACCGCCACTTCGTCGGGGTCGCTGTATTCGACAATTTCGGCACACAAATTACTACAC 139155 || || ||||| ||||| | | |||| || || | || | || | || || ||| Sbjct 10520557 CAGACGGCCACCTCGTCCTTGCTGGTGTACTCCACCACCTCCGTGCAGAGGTTGCTGCAC 10520616 Query 139156 TTGATCGTACCTAAATTTTGTTGATTGCTTTTTCGGTTACAAGCATCTTTGTAAAGCATA 139215 ||||| || || | || || || ||||| || | ||| ||||| || ||||| ||||| Sbjct 10520617 TTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTCCTGTTGCAAGCGTCCTTGTAGAGCATG 10520676 Query 139216 TACGGTGTGCCAGTTTCCACTTGTGTCTCTATAATGAATTTGAACAAGTCCCTAGCTTGT 139275 || || || || ||||| || | ||| || ||| | || || | ||| Sbjct 10520677 TAGGGGGTCCCGGTTTCGGTCTGGGACTCGATGATG---GCGTACCAGAGC--TGCTGCG 10520731 Query 139276 ATTTGACGCAC---GTAAAGT---TCGTCGCGCTCGTACTTTTCGTAGAGTTCGTCGAA- 139328 || || ||| | | | | || ||| || || |||||| | ||||| Sbjct 10520732 CCTTCAC-CACCCTTTTCACTCTCCCTTCCTTCTCATATTTGGTGTAGAGCTTCTCGAAC 10520790 Query 139329 TCGT-TCACC-GTAGGCGTCAGAAAGATCGCGACACTTGTCAGGACACATGAGCGACCAT 139386 || | || || | | |||| || | |||||| | |||||||| | ||||| Sbjct 10520791 TCCTCTCCCCAGCACTCGTC---CAGCCCAGGACACTCGCTGGGACACATCAAGGACCAG 10520847 Query 139387 ACGCCGTTCGCCTTGACGCGCCTCATGAACAGATCCGGAATCCACAAAGCGAACAGCAAA 139446 | ||| || || | | |||||||||| || || |||||||| ||| | | | Sbjct 10520848 TCCTGGTTGCTCTCCACTCTCTTCATGAACAGGTCAGGGATCCACAAGGCGTAGAAAAGG 10520907 Query 139447 TCGCGCGCCTTCTTATCTTCCGAACCCATGTTACGTTTCATGTTAAGGAAATCAAAAACG 139506 || | || ||| || ||| || |||| |||| | ||||| || || ||| Sbjct 10520908 TCTCTGGCTCTCTGCTCCTCCTTTCCTGTGTTCTTCTTCAGCTCCAGGAAGTCGAACACG 10520967 Query 139507 TCAGCGTGCCATGGTTCCAGATAGATGGCCATTGCGCC---TTTCCGTTTGCCACCTTGA 139563 || ||||||||| |||||||| ||||| | || || | || ||||| || || Sbjct 10520968 TCGAAGTGCCATGGCTCCAGATACATGGCGAAGGCCCCGGGTCTCTTGTTGCCGCCCTGG 10521027 Query 139564 TCGACGTGTCGTACAGCATTATTGAATACGCGCAACATCGGCTCCAGACCGCTCGCTGTT 139623 || |||| || | | || ||| | || | || ||||||| ||| ||| | | | Sbjct 10521028 TCAACGTACCGAGCGGTGTTGTTGTAAACTCTCAGCATCGGCACCAACCCGTTGGAGTTG 10521087 Query 139624 CCGTTGGTGCTACGGATGGGACTGTTGCG-AGCTCGGACGTCATGT-ACATTGATGCCGA 139681 |||||||||| |||| || | || | ||||| | || | || | ||||| Sbjct 10521088 CCGTTGGTGCCTGCGATGTAGCT-TCCCGTCGATCGGATG-CAGCTCACCGCCACGCCGA 10521145 Query 139682 TTCCGCCGCCAAATTTGGATATTAAAACGCAATCGCGT-AATGTCTCGTATATACCTCTT 139740 | ||||| | | ||||| || | |||| | || | | || ||||| || ||| Sbjct 10521146 TCCCGCCAGCGGACTTGGAAATGAGCGCGCACT-GCTTCAGGGTGTCGTAGATGCCTTCG 10521204 Query 139741 ATGCTGTCGTCCTGCATCGTGACCAGAAAGCATGACGAAAGTTGCGGTAGTTTCGTGCCG 139800 ||||||||||||| ||| | || ||| ||||| || || ||||| | || || ||| Sbjct 10521205 ATGCTGTCGTCCTTCATGGCGAGCAGGAAGCAACTGGACAGCTGCGGCCGGTTGGTCCCG 10521264 Query 139801 GCTGCAAACAGAGTAGGACTCGCGTGCGTGAACATTTGTTTCGACATCAATTCGTACGTT 139860 || || || || ||| ||||| |||||| | | ||||| | | ||| || Sbjct 10521265 GCGTTGAAGAGGGTCGGAGAGGCGTGGGTGAACCACTTCTCCGACAGGAGGTTGTAGGTC 10521324 Query 139861 TCGATGGCGCTCACAATATCCCTTCCGTGGATACCGACAGAGACTCGCATCAGCATATGT 139920 |||| |||| | || || | |||||||| || || || || | ||| ||||| || Sbjct 10521325 TCGACGGCGGCGTCGATGTCTCGCCCGTGGATCCCAACCGACACCCTCATGAGCATGTGC 10521384 Query 139921 TGGATCCGTTCGGCCACCGCGCCCTCGAtttttttCAGATA--ACCGTTCTCTAGGGTCT 139978 || || |||||||| || | ||| || ||| || | || ||| || |||| Sbjct 10521385 TGCGGTCGCTCGGCCACTTTCCCGTTGATCTTCAGCAGGTAGGAACG--CTCCAGAGTCT 10521442 Query 139979 TGTAGCCAAAGTACCTATAGTTGAAATC 140006 || |||| ||| | | ||| |||||| Sbjct 10521443 TGAAGCCGAAGAAGTTGTAGGAGAAATC 10521470 >seq13 Length=27080333 Score = 102 bits (112), Expect = 7e-17 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| |||||| | || || || ||||| ||||| || || || || || ||| ||| | Sbjct 11060746 ATGCAAATCTTTGTCAAGACCCTCACCGGCAAAACCATCACCCTGGAGGTGGAACCCAGC 11060687 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| || || || || || || || || || Sbjct 11060686 GACACCATTGAGAACGTCAAGGCCAAGATCCAGGATAAGGAGGGCATCCCCCCTGACCAG 11060627 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | |||||||||| || ||||||||||| ||| | | | |||| || || ||| Sbjct 11060626 CAGAGGCTGATCTTTGCTGGCAAACAGCTGGAAGATGGCCGCACCCTGTCCGACTACAAC 11060567 Query 24884 ATTCAAAAGGAATCGACACTACAC 24907 || || || ||||| || || ||| Sbjct 11060566 ATCCAGAAAGAATCCACCCTCCAC 11060543 Score = 100 bits (110), Expect = 3e-16 Identities = 149/209 (71%), Gaps = 2/209 (1%) Strand=Plus/Minus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||||||| | ||||| || ||||| ||||| || || || || || || ||| Sbjct 11062758 GATGCAGATCTTTGTGAAAACCCTCACCGGCAAAACCATCACCCTGGAGGTGGAGCCCAG 11062699 Query 24763 CGACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATC 24821 || || | || |||| ||| | || |||||| || || || || || || || || | Sbjct 11062698 TGATACCATTGAGAACGTTAAGGCCAA-GATCCAGGATAAGGAGGGCATCCCCCCTGACC 11062640 Query 24822 AACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATA 24881 | || | ||||||||||||| || |||||||| ||| | | | |||| || || | Sbjct 11062639 AGCAGAGGCTGATCTTTGCCGGAAAGCAGCTGGAAGATGGCCGCACCCTGTCCGACTACA 11062580 Query 24882 ACATTCAAAAGGAATCGACACTACACTTG 24910 | || || ||||| || || || ||| || Sbjct 11062579 ATATCCAGAAGGAGTCCACCCTTCACCTG 11062551 >seq16 Length=24388307 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||| || | ||||| || || || || || || || || || || || ||| Sbjct 2613045 GATGCAGATTTTCGTGAAAACCCTCACTGGGAAGACCATCACCCTGGAGGTGGAGCCCAG 2613104 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 || || | || | || || |||||| || || |||||||| || ||||| || || Sbjct 2613105 TGATACCATTGAGAACGTGAAGGCAAAGATTCAGGATAAAGAAGGCATTCCTCCTGACCA 2613164 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || | |||||||||| || ||||||||||| ||| | | | |||| || || || Sbjct 2613165 GCAGAGGCTGATCTTTGCTGGCAAACAGCTGGAAGATGGCCGCACCCTGTCGGACTACAA 2613224 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 | | || ||||| || || || ||| ||||| | || || | ||||| Sbjct 2613225 CGTCCAGAAGGAGTCCACCCTCCACCTGGTGCTCCGCCTGAGGGGAGG 2613272 >seq18 Length=80077792 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || || || ||||| || || || || || || ||| Sbjct 51870272 ATGCAGATCTTCGTCAAGACCCTCACTGGCAAAACCATCACCCTGGAGGTTGAGCCCAGT 51870213 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || ||| |||| || || || || || || || || || Sbjct 51870212 GACACCATTGAGAACGTCAAGGCCAAGCTCCAGGATAAGGAGGGCATCCCCCCTGACCAG 51870153 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | |||||||||| || || |||||||||||| | | | |||| || || || Sbjct 51870152 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAGGATGGCCGCACCCTGTCCGACTACAAT 51870093 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGT 24912 || || ||||| || || || ||| |||| Sbjct 51870092 ATCCAGAAGGAGTCCACCCTCCACCTGGT 51870064 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449897459407000