Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20hellerii_20[genbank_20GCA_5F001443345.1_202015-11-13] 25 sequences; 733,802,474 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq18 136 3e-27 seq13 134 9e-27 seq16 127 1e-24 >seq18 Length=80077792 Score = 136 bits (150), Expect = 3e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 || ||||||| | ||||||||||| | |||| ||||||||| || || ||||| || Sbjct 51870046 CCACCCCTCAGACGGAGGACCAGGTGGAGGGTGGACTCCTTCTGGATATTGTAGTCGGAC 51870105 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 ||| |||| |||| ||||| ||||| || || |||||||| | |||||||| | || Sbjct 51870106 AGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGG 51870165 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACA 34930 | |||||||| || | | || |||||| | || | ||| ||| ||| || Sbjct 51870166 ATGCCCTCCTTATCCTGGAGCTTGGCCTTGACGTTCTCAATGGTGTCACTGGGCTCAACC 51870225 Query 34931 TCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 || | ||| ||||| || || ||||||||||| || |||||||||||| Sbjct 51870226 TCCAGGGTGATGGTTTTGCCAGTGAGGGTCTTGACGAAGATCTGCATG 51870273 >seq13 Length=27080333 Score = 134 bits (148), Expect = 9e-27 Identities = 154/207 (74%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 34771 CAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAG 34830 |||||||| |||| ||||||||| || || ||||| || ||| |||| |||| ||||| Sbjct 11062551 CAGGTGAAGGGTGGACTCCTTCTGGATATTGTAGTCGGACAGGGTGCGGCCATCTTCCAG 11062610 Query 34831 TTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTAT 34890 ||||||||||| |||||||| | |||||||| | || | |||||||| || | || Sbjct 11062611 CTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGGAT 11062670 Query 34891 TTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCC 34950 || || ||| | || | ||| ||| ||| || || | ||| ||||| || || Sbjct 11062671 CTTGGCCTTAACGTTCTCAATGGTATCACTGGGCTCCACCTCCAGGGTGATGGTTTTGCC 11062730 Query 34951 CGTGAGGGTCTTTACAAAGATCTGCAT 34977 |||||||| || |||||||||||||| Sbjct 11062731 GGTGAGGGTTTTCACAAAGATCTGCAT 11062757 Score = 113 bits (124), Expect = 3e-20 Identities = 169/240 (70%), Gaps = 5/240 (2%) Strand=Plus/Plus Query 34743 AATCATTTCCT-----CCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAAT 34797 |||||||| || ||||||| | || || ||||| | |||| || ||||| || Sbjct 11060507 AATCATTTACTGGCCACCCCTCAGACGGAGAACAAGGTGGAGGGTGGATTCTTTCTGGAT 11060566 Query 34798 GTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTG 34857 ||| ||||| || ||| |||| |||| ||||| || || || || |||||||| | || Sbjct 11060567 GTTGTAGTCGGACAGGGTGCGGCCATCTTCCAGCTGTTTGCCAGCAAAGATCAGCCTCTG 11060626 Query 34858 CTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTC 34917 |||||| | || | |||||||| || | || || |||||| | || | || Sbjct 11060627 CTGGTCAGGGGGGATGCCCTCCTTATCCTGGATCTTGGCCTTGACGTTCTCAATGGTGTC 11060686 Query 34918 ATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||| || || || | ||| ||||| || || ||||||||||| |||||||| ||||| Sbjct 11060687 GCTGGGTTCCACCTCCAGGGTGATGGTTTTGCCGGTGAGGGTCTTGACAAAGATTTGCAT 11060746 >seq16 Length=24388307 Score = 127 bits (140), Expect = 1e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 34750 TCCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGA 34809 ||||||||||| | || |||||||| | |||| ||||||||| | ||| |||||||| Sbjct 2613273 TCCTCCCCTCAGGCGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGACGTTGTAGTCCGA 2613214 Query 34810 TAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGG 34869 ||| |||| |||| ||||| || || || || |||||||| | |||||||| | || Sbjct 2613213 CAGGGTGCGGCCATCTTCCAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGG 2613154 Query 34870 CACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGAC 34929 | || || || || | || ||| || ||| | || | ||| ||| ||| || Sbjct 2613153 AATGCCTTCTTTATCCTGAATCTTTGCCTTCACGTTCTCAATGGTATCACTGGGCTCCAC 2613094 Query 34930 ATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || | ||| |||||||| || |||||||| || || || |||||||| Sbjct 2613093 CTCCAGGGTGATGGTCTTCCCAGTGAGGGTTTTCACGAAAATCTGCAT 2613046 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325692700765475