Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20hellerii_20[genbank_20GCA_5F001443345.1_202015-11-13] 25 sequences; 733,802,474 total letters Query= NC_022776.1 Length=41757 Score E Sequences producing significant alignments: (Bits) Value seq18 284 3e-72 >seq18 Length=80077792 Score = 284 bits (314), Expect = 3e-72 Identities = 755/1126 (67%), Gaps = 37/1126 (3%) Strand=Plus/Minus Query 14101 aGTCATCAAGGCAGGTAG-TGAGCTTATGAAACGCTATCCAACGGATAAGCAAGCTGAGA 14159 ||| ||||| || | ||| ||| | ||||||| ||||| || | ||| |||||||| | Sbjct 30100250 AGTTATCAAAGC-GATAGCTGAAATATTGAAACGATATCCGACTGCTAAACAAGCTGAAA 30100192 Query 14160 AAATGCAACTTGAGATTGATAAGCTCAAATCTCAAATCGGTGGCGATGAAGGTCAAGATG 14219 || | | ||||| || || || || ||||||||||| ||| ||||| | || || | Sbjct 30100191 AACTTGAGCTTGAAATAGAGAAACTTAAATCTCAAATTGGTATGGATGACGAGCATGACG 30100132 Query 14220 AGAAAATCGCTG-GTTTCCTAAACCTCATCAAAGGAGCTGTTAGCGATGGACTTGAGTAA 14278 | || | | | |||| |||| || | | ||| ||| ||| ||| || ||||| Sbjct 30100131 ATAAGCTTGTAGAGTTTGCTAAGGCTT-TGAGAGGTGCTTTTA---ATG-ACA--AGTAA 30100079 Query 14279 ACTCTATACCAAGCGACAGTTAGAAGTGCTTAATTACATCTGGAATCATGATTGGTTTAT 14338 || | ||||| ||| | |||| |||| | | || |||| | ||||| Sbjct 30100078 GTTC-ACACCAAA--ACAAGAACAAGTCCTTAGACGAGTTTTAAACGATGACTTCTTTAT 30100022 Query 14339 CTGTGGGCTTCATGGCGCTAAACGTGCTGGTAAGACTGTAGTTAATAACGACACTTTCGT 14398 || || | ||||| || || ||| | ||||||||||| | ||||| ||| | Sbjct 30100021 TTGCGGTTTGCATGGTGCAAAGCGTTCAGGTAAGACTGTTTTGAATAATATGGTCTTCCT 30099962 Query 14399 AACTGAGTTAAGCCGTGTCAGGAAGATTGCTGACTGTTTAGGTGTAGATGAACCTATCTA 14458 | ||| | | || || | || ||||| |||| | |||||||| || || Sbjct 30099961 GAATGAAATTGATAGAGTTAGAACAATAGCTGATAAGTTAGACATTGATGAACCGATGTA 30099902 Query 14459 TATCTTAGCGGGTACATCTTCAACGTCGATACAGAACAACGTGCTGCAAGAACTTTATAA 14518 ||| || || || || |||||||| |||||||| || || | | |||||||| ||||| Sbjct 30099901 TATTTTGGCTGGGACGTCTTCAACTTCGATACAAAATAATATTATCCAAGAACTCTATAA 30099842 Query 14519 TAAATACGGATTTGAGCCTAGATATGACAAACATGGCTCTTTTGTTTTTTGTGGAGTTAA 14578 | | | ||||||| | |||||||||||| || | ||| | |||| ||||| || Sbjct 30099841 CATGTTTGATATTGAGCCAAAATATGACAAACACGGAGCGTTTACTCTTTGCGGAGTCAA 30099782 Query 14579 AGTTGTCCAAGTTTACACTGGTTCAATTAGTGGTCTTAAACGTGCCCGCGGTTTTACAGC 14638 ||| | |||||||| |||||||||||| ||| | ||||| || || ||||| ||||| Sbjct 30099781 GGTTATTCAAGTTTATACTGGTTCAATTTCAGGTTTAAAACGAGCTCGTGGTTTCACAGC 30099722 Query 14639 GTTCGGCGCTTATGTTAATGAGGCATCACTTGCTAACGAGTTTGTTTTCAAAGAAATCAT 14698 || || || ||||| || |||||||| | || || || || |||||||||||||| Sbjct 30099721 TTTTGGAGCCTATGTGAACGAGGCATCGTTGGCCAATGAACAAGTGTTCAAAGAAATCAT 30099662 Query 14699 CTCACGCTGTTCTGGTGAAGGTGCTCGTGTGGTTTGGGATAGTAACCCAGATAATCCCAA 14758 |||||| ||||| || || ||||| || | |||||||||||||||||||| | || | Sbjct 30099661 CTCACGTTGTTCGGGAGAGGGTGCACGGATTGTTTGGGATAGTAACCCAGACATCCCGAC 30099602 Query 14759 TCACTGGCTTAATCGAGATTATATTGGCAAAAAT---GACGGAAAGATTATAGA-TTTCA 14814 |||||||| | || |||||||| ||| | |||| | ||| ||||| ||||| Sbjct 30099601 CCACTGGCTCAGACGGGATTATAT---CAACTCTGGCGACGATATGATCATAGACTTTCA 30099545 Query 14815 GCTTCAAGCTTGATGACAATACTTTCTTATCAAAACGCTATATAGACTCTATCAAAGCAG 14874 |||||||| ||||| ||||| ||| | || | | || || |||||| | Sbjct 30099544 -TTTCAAGCTAGATGATAATACATTCATGTCTGACAGATACCGCGAAAATATCAAGAATG 30099486 Query 14875 CTACGCCCAAGGGCAAATTCTACGATAGAGATATCAATGGGCTTTGGAC-AGTGGCTGAA 14933 | || || || ||| || || |||| ||| ||| | ||| | | ||| ||| Sbjct 30099485 CCACACCAGCTGGTGTATTTTATGACCGAGACATCCTTGGTTTGTGGGCGACTGG-TGAG 30099427 Query 14934 GGCGCTATCTACGCTGATTATGACAGCAAGATACACG-TAGTTGATGAATTGCCAG-ATA 14991 |||| | | || ||||| | ||| ||| | | | | || ||| | | |||| | | Sbjct 30099426 GGCGTTGTATATCGTGATTTT---AGCGAGA-ATATGTTTGTGGATAACGTACCAGAAGA 30099371 Query 14992 TGAAACGATA--TTTTGGTGGCATTGACTGGGGTTATACTCACTACGGCTCTATCGTGGT 15049 | ||| | | | || ||| |||||||||| ||| |||| |||||||| || || Sbjct 30099370 TATAACTAAAGTCTATGCTGGTGTTGACTGGGGGTATGAACACTTTGGCTCTATTGTAGT 30099311 Query 15050 AGTTGGTGAAGGTGTAGATGG--CAACTTCTATCTTGTCGATGGCGTAGCAGCGCAATTC 15107 || || ||| ||| || || || ||||| | || | || |||| | Sbjct 30099310 TGTCGGAGAAACCTCAGACGGTTCAGTTTATATCT--TAGAGGAACACGCTCATCAATAC 30099253 Query 15108 AAAGAGATAGATTGGTGGGTAGAACAAGC-AAGGAAACTGACTGGCATCTATGGGAACAT 15166 |||||||| || | |||||||| | || || |||| | | ||||| || || Sbjct 30099252 AAAGAGATTGACTTTTGGGTAGACCTTGCTAAAGAAA-TCAAAAAACGATATGGCAATAT 30099194 Query 15167 TCCGTTATATGCTGATAGTGCCCGCCCTGAGCACGTAGCAAGATTT 15212 | |||| | || ||||| || || ||||| ||||| || |||||| Sbjct 30099193 TACGTTTTGGGCAGATAGCGCACGACCTGAACACGTTGCTAGATTT 30099148 Score = 100 bits (110), Expect = 8e-17 Identities = 123/167 (74%), Gaps = 6/167 (4%) Strand=Plus/Minus Query 2290 TATAAAGATTGGTTCCCACGTATGACTGAATATGGTTTTACAGATGGTGAAGACTTTAGC 2349 ||||| || ||||| || || ||| ||||| || ||| | || |||| ||| | Sbjct 61811270 TATAACGACTGGTTTCCGCGCATGCTCGAATACGGCTTTGAGCAGGGCAAAGAGTTTTAC 61811211 Query 2350 TCATTTTTGAGCAAAA-----GTACCGG-AGGGCGACCAAGTCAAGACCACATCATCAAA 2403 |||||||||||||||| | || || ||| || || | |||| |||||||||| Sbjct 61811210 TCATTTTTGAGCAAAACCCCCGAACAGGCAGGACGTCCCCGCGAAGATCACATCATCAGC 61811151 Query 2404 CTAGACATGGCAAAAGAAATTGCAATGATTCAACGTACCGATAAAGG 2450 || |||||||| |||||||| || |||||||| || ||||| ||||| Sbjct 61811150 CTGGACATGGCCAAAGAAATCGCCATGATTCAGCGCACCGAAAAAGG 61811104 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 133500760366950