Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20hellerii_20[genbank_20GCA_5F001443345.1_202015-11-13] 25 sequences; 733,802,474 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq1 221 9e-52 seq10 91.5 1e-12 >seq1 Length=30011118 Score = 221 bits (244), Expect = 9e-52 Identities = 934/1468 (64%), Gaps = 14/1468 (1%) Strand=Plus/Minus Query 281416 TTTATCAGCGGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAAT 281475 ||| || |||||| |||||| || || || ||||| || | |||||| || ||||| || Sbjct 12115098 TTTGTCGACGGCAGACACATTTAGGATGCCGTTGGCGTCGATATCAAAGGTAACTTCGAT 12115039 Query 281476 TTGAGGGACCCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATT 281535 || || || ||||| ||||||| || | || | | ||| | ||||| ||| Sbjct 12115038 CTGTGGCACGCCTCTGGGAGCAGGAGGAAGACCAGAGAGCTCAAACTTCCCCAGGAGATT 12114979 Query 281536 ATTATCTTTAGTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATT 281595 || || || || | || ||||| || | | || || ||| | | || || Sbjct 12114978 GTTGTCCTTTGTCATGGCTCTCTCACCTTCATAGACCTGAATCAGGACTCCTGGCTGGTT 12114919 Query 281596 ATCTGAATAAGTTGTAAATACTCTGGATTTT-TTACAAGGAATTGTTGTGTTTCTATCAA 281654 |||||| || || | || | |||| | | || || || || ||||||| | | Sbjct 12114918 ATCTGAGTATGTGGAGAAGA-TCTGAGTCTGCTTTGTGGGGATGGTGGTGTTTCGCTTGA 12114860 Query 281655 TAATATTGGTCATAATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAA 281714 ||| | ||||||| ||||| ||||| || | || || || | || | ||||| | Sbjct 12114859 TAAGAGGTGTCATAACGCCACCGGCTGTCTCAATGCCCAGCGACAAGGGTGCCACATCCA 12114800 Query 281715 CTAGGACAATATTTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAG 281774 || | | || ||| | ||||| || | ||| | || ||||| || || | | Sbjct 12114799 GGAGCAGTAAATCTTGGACATTTTCTGAGGTGTCACCCATGAGGATAGCAGCCTGGACTG 12114740 Query 281775 CAGCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGA 281834 | |||||||| || || ||||||||||| || | | | ||||||| | ||||||||| Sbjct 12114739 CTGCACCATAGGCCACCGCTTCATCAGGGTTGATGCTCTTGTTTAGTTCTCTACCATTGA 12114680 Query 281835 AAAAATTTGAAAGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATACAA 281894 | || | || || | | | || || || | | || || ||||||| |||| Sbjct 12114679 AGAAGTCCTGCAGGAGCTTTTGGATTTTGGGGATTCTTGTAGAGCCACCAACTAGGACAA 12114620 Query 281895 TTTCATGCACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAA 281954 ||| || | || ||||||||||| || | ||| || | || ||||| || || | Sbjct 12114619 CTTCGTGGATCTTGGATTTATCCAGCTTAGCATCTTGTAGGGCCTTCTCAACTGGCTCCA 12114560 Query 281955 GACCAGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACAT 282014 | | ||||| | |||||| || || ||||| || || || || ||| | Sbjct 12114559 GTGTTCCCCTAAAGAGGTCTGAGTTGAGCTCCTCGAAGCGTGCCCTTGT--GATTGAGGT 12114502 Query 282015 -TATAA-TCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGA 282072 || || ||||| || || || | || |||| ||||| | | ||||| || || Sbjct 12114501 GTAAAAGTCAATGCCCTCAAAGAGTGAGTCAATCTCAATGCTTGCCTGAGTGCTGGAGGA 12114442 Query 282073 TAGTGCACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTT----TGCTG 282128 | | | || || | ||||| ||||| | ||||| | | ||| | | ||| Sbjct 12114441 CAAGGTCCTCTTTGCTCTCTCACAAGCTGTGCGCAGTCTCCTCACTGCTCTCTTGTTCTG 12114382 Query 282129 ATTGATTCAAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGAC 282188 |||| || | || | ||||| || || || || ||| | | || | | Sbjct 12114381 GCTGATG----TCCTTCTTGTGCTTTCTTTTAAACTCCTCCACAAAGTGGCTGACCATTC 12114326 Query 282189 GATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAA 282248 | || |||||||| || || || | | || | || | || | | | || | || | Sbjct 12114325 GGTTGTCAAAATCCTCTCCGCCGAGGTGTGTGTCCCCGGCTGTGGATTTCACCTCAAATA 12114266 Query 282249 GTCCATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAA 282308 ||||| |||| | || | | || ||| || || ||||| | |||||| || | Sbjct 12114265 TGCCATCCTCAATGGTCAGGATGGACACGTCAAAAGTGCCTCCACCAAGATCAAAGATGA 12114206 Query 282309 GTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTG 282368 | || || ||| || | ||||||||| || || |||| || ||||| || | Sbjct 12114205 GGACGTTGCGCTCTCCTCTTTTGCCTTTATCAAGGCCGTAGGCAATGGCTGCAGCTGTCG 12114146 Query 282369 GTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTT 282428 | ||||| || || | | |||||| || || | || ||| ||||| || ||||||| Sbjct 12114145 GCTCATTTATGATGCGGAGAACATTTAGTCCGGAGATCACTCCAGCATCCTTTGTGGCTT 12114086 Query 282429 GTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCTGTTACTTCTTTTC 282488 | ||||| ||||| ||||| || || || || || || || |||| | || | || Sbjct 12114085 GCCTTTGGGAATCATTAAAGTAAGCTGGCACTGTGATGACCGCATTCGACACCCTCTGTC 12114026 Query 282489 CAATATAAGCGCTTGCTGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTG 282548 | | | | || ||| ||| | |||||||| | | ||| || ||||| | ||| | Sbjct 12114025 CCAGAAAGGCCTCAGCTATTTCTCTCATTTTAACCAGGACCATCGAGGAAATCTCTTCAG 12113966 Query 282549 GAGAATATTGCTTGGATTCATTTTGATATGATACTTCAAAATATGGTTTATTACCAACAT 282608 || | || ||| ||| || |||| || | | | || || | | Sbjct 12113965 GACAGAATGTCTTAATTTCTCCTTTATATTCCACCTGGACTTTGGGCTTTCCGTTGTCGT 12113906 Query 282609 TAATAACTTTAAATGGCCAATATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTC 282668 | || || || || ||||| |||||| || || || || |||||| ||| || Sbjct 12113905 TGATCACCTTGAACGGCCAGAGTTTCATGTCAGACTGGACCACCAGGTCATCAAACCTTC 12113846 Query 282669 TACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATT 282728 | ||||| | ||||| |||||||| || || ||||| || || | ||| |||| | | Sbjct 12113845 TTCCAATGAGCCGTTTGGCATCAAAGATCGTGTTGGTGGGGTTCATGGCAACTTGGTTCT 12113786 Query 282729 TGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGC 282788 |||| |||||||| || || ||||| || ||||| | || || |||||||| | Sbjct 12113785 TGGCAGCATCTCCGATGAGCCTCTCTGTGTCGGTAAAGGCCACGTAGCTGGGAGTTGTCC 12113726 Query 282789 GATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACAAC 282848 || ||||||||||| || |||||||| ||||| |||| || | || || |||||| Sbjct 12113725 TGTTGCCTTGATCATTGGCGATAATTTCCACTTTTCCATGCTGGAAGACCCCGACACAAG 12113666 Query 282849 TAAAAGTTGTTCCTAAATCAATACCAAT 282876 | || || || | ||| || ||||| Sbjct 12113665 AGTAGGTGGTGCCCAGATCGATGCCAAT 12113638 >seq10 Length=29643077 Score = 91.5 bits (100), Expect = 1e-12 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 281431 CACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCT 281490 |||||| ||||| || |||||||| | ||||| || ||||| || |||||||| ||||| Sbjct 16871391 CACATTGAGAATGCCGTTGGCATCAATGTCAAAGGTCACTTCGATCTGAGGGACTCCTCT 16871450 Query 281491 CTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAA 281550 ||||||| || || || ||| | |||| | |||| ||||||||||||| || | Sbjct 16871451 GGGAGCAGGCGGAATACCAGTCAATTCAAATTTCCCCAAGATATTATTATCTTTGGTCAT 16871510 Query 281551 TTTTCGTTCACCCTCGAAAA 281570 || ||| || ||| ||| Sbjct 16871511 GGCTCTTTCCCCTTCGTAAA 16871530 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740629172605650