Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20hellerii_20[genbank_20GCA_5F001443345.1_202015-11-13] 25 sequences; 733,802,474 total letters Query= NC_023688.1 Length=222006 Score E Sequences producing significant alignments: (Bits) Value seq18 100 4e-16 >seq18 Length=80077792 Score = 100 bits (110), Expect = 4e-16 Identities = 286/434 (66%), Gaps = 12/434 (3%) Strand=Plus/Minus Query 28144 GTGACCACACCCAAGTTGTTACGGCCTTCATGAACTTCAACACCGTTTTCGTCTTCCCAG 28203 || || ||||| | || | || ||| || || |||||||| ||||| |||| ||| Sbjct 63062710 GTCACAACACCTAGATTCATCCGACCTGAATTGACCTCAACACCATTTTCATCTTTCCAT 63062651 Query 28204 CGATGCAAGAAACTACGGCATCCCATTGGGAATTTGAAACTACCAGTCACTTCAACGATC 28263 | || | |||| |||||| ||||| || | |||||| ||| |||| ||| | ||| Sbjct 63062650 CCTTGGAGGAAAGAACGGCAGCCCATAGGAACCTTGAAAGAACCTGTCAGTTCGATAATC 63062591 Query 28264 TTATCATAGCTCAGAATGTCCGGATACATACGTTTCGCAGCGCATTCCAGAGCCAACTGT 28323 ||||| ||| || | || || ||||| || || | || || || || ||||||||| Sbjct 63062590 TTATCGTAGGACAAGACATCAGGGTACATCCGCTTGGTTGCACACTCGAGGGCCAACTGT 63062531 Query 28324 TTGATA-CG-ATACAGCGGATCAGTCGGGTTC-AAGTTGTGTCCGTCTTTCAGAGCGAAT 28380 |||||| || | || || | || ||| |||||| | || ||| | | || Sbjct 63062530 TTGATATCGTAGTTAGGTGAACCCTC---TTCTAAGTTGAGGCCTCTTTTTAATGTAAAG 63062474 Query 28381 ACCAGTTTCGGGAAAACAGGGGTGATACCCTCTTTACCAAGACCAGCCAAACGAACTTTC 28440 | ||||| ||||| | | ||| ||| |||||| || | || | || Sbjct 63062473 ATGAGTTTAGGGAAGATGGCTGTGCGGTGTTCTGAACCAAGTCCCTTGATTCGGATGTTT 63062414 Query 28441 AGGATTGCTTCTTGAATCAGTTCTGACTC---CCAGCTAGTACCAAGACCAAAGCCGAAG 28497 | ||| |||| |||||| ||| ||| | ||||| || | |||||| || | Sbjct 63062413 AAGATAGCTTTTTGAAT---TTCCCGCTCAAAACGACTAGTCCCTAAACCAAAACCTAGC 63062357 Query 28498 GTACAGAACGGAGTTTGACCATTTGCGGAGTGCAGAGTGTTGACCTCATACTCCAGACCT 28557 | | || || ||||| ||||||| | | |||||||||| |||||||| ||| | Sbjct 63062356 GAAGTAAAAGGTGTTTGCCCATTTGAAGTGAAGAGAGTGTTGATTTCATACTCAAGAGAT 63062297 Query 28558 TGCATAGCATCATA 28571 ||||| ||||| || Sbjct 63062296 TGCATGGCATCGTA 63062283 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 710290978034000