Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20hellerii_20[genbank_20GCA_5F001443345.1_202015-11-13] 25 sequences; 733,802,474 total letters Query= NC_023724.1 Length=62991 Score E Sequences producing significant alignments: (Bits) Value seq18 141 4e-29 >seq18 Length=80077792 Score = 141 bits (156), Expect = 4e-29 Identities = 225/317 (71%), Gaps = 8/317 (3%) Strand=Plus/Minus Query 52321 TGTCACACTCCCCGAAGTGGCGTGAACAACTCGGCACACTCGGCGGCGGCAACCATTTCA 52380 |||| || || |||||||||||| | || | || | | || || || |||||||||| Sbjct 70158310 TGTCGCATTCGCCGAAGTGGCGTCAGCAGTTAGGTTCGTTGGGTGGTGGTAACCATTTCA 70158251 Query 52381 TCGAACTGTGCGTCGACCACCGCGGCTGCGTGTGGCTGTTCCTGCACTCCGGTTCACGTG 52440 | ||| |||| | ||| | | | | |||||||| ||||||||||||||||||| || | Sbjct 70158250 TTGAATTGTGTTTGGACGAGCAGGACCGCGTGTGGATGTTCCTGCACTCCGGTTCCCGCG 70158191 Query 52441 GCGTCGGCAACAAGATCGCCCAGAAGCACATCAAGATCGCGCAAGCCGAATGCGACCTGT 52500 | || ||||||||||| || |||||||||| ||||| || || || || | || Sbjct 70158190 GTGTGGGCAACAAGATTGCAAAGAAGCACATTAAGATTGCCCA--GCGTCTGTG---TGA 70158136 Query 52501 ACGGCATCGAACTGCCCGGCGGCAACAAGGATCTGGCGTACCTCGTCGAAGGTGA-ACCG 52559 | | | | | ||| || |||||||||| |||||||| | || | ||| || || Sbjct 70158135 GCAGTGGTGGATTCCCCTGC-CCAACAAGGATTTGGCGTACTTGGT-GCAGGGGACCCCA 70158078 Query 52560 TCGTTTGACGCGTACCTGAATGAGCTGCGTTGGGCGCAACAGTTCGCACTGTTCAACCGC 52619 ||| | || || ||| | || || |||||||| | ||| || | ||||||| Sbjct 70158077 GAGTTCAAGGCTTATCTGCAGGATTTGAAGTGGGCGCAGCGGTTTGCCTTCCTCAACCGT 70158018 Query 52620 GACGAAATGATGGACCG 52636 || |||||||||||||| Sbjct 70158017 GAGGAAATGATGGACCG 70158001 Score = 100 bits (110), Expect = 1e-16 Identities = 108/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 51997 AACTGCCGTTCGTGCATCCGCACGTTGCCCTCATGCCCGACGCGCACGTCGGCAAAGGTT 52056 |||||||||| | | ||||| ||||| |||||||||||||| ||| ||| ||| | Sbjct 74070674 AACTGCCGTTTATTTACCCGCATGTTGCGCTCATGCCCGACGCCCACACCGGGTTAGGGT 74070733 Query 52057 CGTCTGTTGGTACCGTCATCCCCACCCGCGGCGCAGTCATCCCCGCCGCGGTCGGTGTCG 52116 |||| || || ||||| || |||| | || || || |||||||| || || || | Sbjct 74070734 CGTCGGTGGGAACCGTGTTCGGCACCATTGATGCCGTGATTCCCGCCGCCGTGGGCGTTG 74070793 Query 52117 ACATCGGCTGCGGCATGATCGCC 52139 ||||||| ||||||||||| ||| Sbjct 74070794 ACATCGGATGCGGCATGATTGCC 74070816 Score = 89.7 bits (98), Expect = 2e-13 Identities = 54/57 (95%), Gaps = 0/57 (0%) Strand=Plus/Plus Query 595 TAGCTCAATTGGTAGAGCAGCGGTCTCCAAAACCGCCGGTTGCAGGTTCGAGTCCTG 651 |||||||||||| ||||||||||||||||||||||| |||||||||||| ||||||| Sbjct 68267912 TAGCTCAATTGGCAGAGCAGCGGTCTCCAAAACCGCAGGTTGCAGGTTCAAGTCCTG 68267968 Score = 82.4 bits (90), Expect = 3e-11 Identities = 68/83 (82%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 30940 TCACCATCCTCGTTCACGCCACTCTTCGAGGTGGGGGCGTTCGGTGCCCAACGTGGTGTC 30999 |||||| || || |||||||||| || |||||||||||||||| || | |||||||| Sbjct 67530599 TCACCAACCGCGGGCACGCCACTCGTCTAGGTGGGGGCGTTCGGCACCGAGGGTGGTGTC 67530658 Query 31000 GTCGCCGTGCCCGGGATAGACGA 31022 || |||||| ||||||| |||| Sbjct 67530659 GTTGCCGTGGCCGGGATGCACGA 67530681 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 201446338621800