Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20hellerii_20[genbank_20GCA_5F001443345.1_202015-11-13] 25 sequences; 733,802,474 total letters Query= NC_023733.1 Length=154573 Score E Sequences producing significant alignments: (Bits) Value seq18 176 4e-39 >seq18 Length=80077792 Score = 176 bits (194), Expect = 4e-39 Identities = 552/843 (65%), Gaps = 28/843 (3%) Strand=Plus/Plus Query 49430 AGTCGATGATCGGCCCGATCCAGCTCCAGCTGCGTTACCAGGGCATCCTGCGTAACGTCC 49489 |||| ||||| || || |||||||| |||||||||| ||||| || |||| ||||| | Sbjct 39945127 AGTCCATGATTGGGCCTATCCAGCTGAAGCTGCGTTATCAGGGTATTGTGCGCAACGTTC 39945186 Query 49490 TGCTGGAGGACACGCTGACCCCCGGCGTGCCGATCCAGTACGACGTGCTGGACGACCTGG 49549 | |||| || | || || || || ||| | ||||||||||| || ||| | || Sbjct 39945187 TTTTGGAAGATGCTTTGGAGCCGGGTGTTCCGGTTCAGTACGACGTTCTTGACCAGTGGG 39945246 Query 49550 GCCAGGCCTACATGCTGCACGGCAATGAGGGCGAGATCCGCATCACCCCCTTCGAGGGCA 49609 ||||||| || || ||||| || ||| || || | ||| || |||| | Sbjct 39945247 GCCAGGCTTATATCCTGCATTCCACTGATGGTGAAGTAAAGGTCAAGATGTTTGAGGCAA 39945306 Query 49610 AGCGTATCGAGGTCCAGCTGTTCCGCATCGCGAGCTTCCCGCAGATCAAGAAGGAAGACC 49669 ||||| | |||| | ||||||||||| || |||||| || || || || || Sbjct 39945307 AGCGTGTGCAGGTTGATCTGTTCCGCATTGCTGCTTTCCCGAAGGTCCGTAAAGAGGATG 39945366 Query 49670 TGT--ACTACCTCCGCAGCAACATCGTGGAGTACACGCAGGACATGACCAAGCAGGCCAT 49727 | | | || |||| || | || ||||| | ||||| | | || | || || Sbjct 39945367 TTTGGATGGCCCGCGCA--AATGTTGTTGAGTATGCTCAGGAAGAGTCTAAAGAAGCTAT 39945424 Query 49728 CATGCGCCAGGAGGACTCGCGCCTCGTGACGCTGCTGGAAGCTGCAGCGGTCTCCTACCG 49787 ||| | ||| |||||||| || || || ||| |||||| ||| | || | Sbjct 39945425 TATGAAGCTGGAAGACTCGCGTCTTGTTACTCTGTTGGAAGGTGCTA---TTTCGCAGTT 39945481 Query 49788 CGTCGTGGACAGCTCGG---CTCAGCCGGGTGTCGGCGCACTGCCCAACGAGATCACCAT 49844 | | ||| | ||| ||| | |||| | || |||| ||||| || ||||| Sbjct 39945482 CCAGGCTAACAACCCGGATGCTCGTACTGGTG---GTGCTTTGCCGAACGAAATTACCAT 39945538 Query 49845 CGCCGGTTCGCACCTGATGCCGG---ACGATCTCTACACGGCGGTCACCTACACCG---A 49898 ||| ||| || || | | ||||||| || | || || | || ||| | Sbjct 39945539 CGC---TTCCGACTACATTACCGCTAACGATCTGTATTCCGCTGTTTC-TATCCCGGATA 39945594 Query 49899 CCAGCGTCAGCTGGACAGCTCGCGCCTGCTGGCGAACCCGCAGGAGTACCGCGACCTGTA 49958 || ||||||||||| || ||| | ||| || | | || ||||| ||| | || Sbjct 39945595 CC--CGTCAGCTGGATTCTTCCCGCATTCTGTGTAATACCCGTGATTACCGTGACTTCTA 39945652 Query 49959 CCGGTGGGACATCAACACGACCGGTTGGGCCTTCAAGGACTCGGTGGTCGCTGGTGAGCG 50018 ||| ||||| |||||| || |||||||| ||||| || || || |||||||| Sbjct 39945653 CCGCTGGGAAATCAACCAAACTGGTTGGGCATTCAAAGATAATGTTGTTGCTGGTGAAAC 39945712 Query 50019 CATCGTCCAGTTCGGCGAGTTCCAGATCGGCAAGTCGATCATCA-TCCCGCGTGGCACCG 50077 ||| | ||||| || |||||||| || || || |||| ||| ||| ||||| Sbjct 39945713 TATCACCACTTTCGGTGAATTCCAGATTGGTAAATCCCCAATCATTCCTGCG-GGCACAA 39945771 Query 50078 TCTACCTGACCCCGGAGCCCGAGTTCCTCGGCGTCTTCCCGGTCATGTACTCCCTCGATG 50137 | || || || || | || || ||||| || || | || || |||||||| || |||| Sbjct 39945772 TGTATCTTACACCCGCTCCTGAATTCCTGGGAGTTATGCCAGTGATGTACTCACTGGATG 39945831 Query 50138 TCGAGGAGGACAACAAGGTGGAGCGGTTCAACAAGGGCTGGGTCATGGACGAGCTGGTCG 50197 | ||||| |||||||||| || ||| | | || ||||| ||||| || || ||| Sbjct 39945832 TGGAGGAAAACAACAAGGTTGAAGACTTCCATTACGGATGGGTTATGGATGAACTTATCG 39945891 Query 50198 GCATGGCCGTGCTCAACCCAAGGGGCATCGTGATTTTGCGCAAG-GCTTGATCCGTATAA 50256 ||||||| | |||||| | || || ||| | |||| ||| ||| | | ||||| Sbjct 39945892 GCATGGCTATTCTCAACGCCGCTGGTATTGTGGCTCTGCGTAAGAGCTAGTTAGTTATAA 39945951 Query 50257 CCA 50259 ||| Sbjct 39945952 CCA 39945954 Score = 105 bits (116), Expect = 7e-18 Identities = 184/268 (69%), Gaps = 0/268 (0%) Strand=Plus/Plus Query 44951 GGGCCATCTCGGCGCGAGTTAACCAGAATTACGATGGTTGGCCATCAGACGAGCTAAAGA 45010 |||| || || | ||||| |||||||| | |||| ||||| || || || || | Sbjct 39942173 GGGCTATTTCTTCCCGAGTGAACCAGAACTTTGATGCGTGGCCGTCTAGTGAACTTAAAA 39942232 Query 45011 AGGCCGCGCACACCTTCATCGGAAAGCCGGTCTTCGTCAACCACGAGAACTACGACCCCA 45070 |||| | ||||| | || ||||| || ||||| ||||| | || | ||||||| Sbjct 39942233 AGGCTTACAAAACCTTTTTAGGCAAGCCTGTTTTCGTTAACCATGTTAATGATGACCCCA 39942292 Query 45071 AGAAGGCCCGGGGAGTTGTTGTCGCGGCTCGGTACGTCGAGAACGGCAATGACAAGTTCA 45130 ||| ||||| || |||||||| || ||| | || || |||| || || |||| || Sbjct 39942293 CGAAAGCCCGTGGCGTTGTTGTTGCTTGTCGTTTTGTTGAAGACGGTAAAGATAAGTACA 39942352 Query 45131 TCGAGGTCATTCAGGAAATCGACGCCAAGCGTTTCCCAAAGCTGGCCCACGAGATCCGCA 45190 |||| |||||||||||| |||| || || ||||| ||| || | || || Sbjct 39942353 TCGAAGTCATTCAGGAAGTCGATGCAGAGAAATTCCCTTTGCTTGCAAAAGAACTCATTG 39942412 Query 45191 CCGGCGGACTTGACTCTGTGTCGATGGG 45218 || ||| | |||||||| || ||||| Sbjct 39942413 AAGGTGGATTAGACTCTGTTTCTATGGG 39942440 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494505445467000