Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20hellerii_20[genbank_20GCA_5F001443345.1_202015-11-13] 25 sequences; 733,802,474 total letters Query= NC_023737.1 Length=155586 Score E Sequences producing significant alignments: (Bits) Value seq18 170 2e-37 >seq18 Length=80077792 Score = 170 bits (188), Expect = 2e-37 Identities = 522/796 (66%), Gaps = 27/796 (3%) Strand=Plus/Plus Query 49955 AGTCGATGATCGGCCCGATCCAGCTCCAGCTGCGTTACCAGGGCATCCTGCGTAACGTCC 50014 |||| ||||| || || |||||||| |||||||||| ||||| || |||| ||||| | Sbjct 39945127 AGTCCATGATTGGGCCTATCCAGCTGAAGCTGCGTTATCAGGGTATTGTGCGCAACGTTC 39945186 Query 50015 TGCTGGAGGACACGCTGACCCCCGGCGTGCCGATCCAGTACGACGTGCTGGACGACCTGG 50074 | |||| || | || || || || ||| | ||||||||||| || ||| | || Sbjct 39945187 TTTTGGAAGATGCTTTGGAGCCGGGTGTTCCGGTTCAGTACGACGTTCTTGACCAGTGGG 39945246 Query 50075 GCCAGGCCTACATGCTGCACGGCAATGAGGGCGAGATCCGCATCACCCCCTTCGAGGGCA 50134 ||||||| || || ||||| || ||| || || | ||| || |||| | Sbjct 39945247 GCCAGGCTTATATCCTGCATTCCACTGATGGTGAAGTAAAGGTCAAGATGTTTGAGGCAA 39945306 Query 50135 AGCGTATCGAGGTCCAGCTGTTCCGCATCGCGAGCTTCCCGCAGATCAAGAAGGAAGACC 50194 ||||| | |||| | ||||||||||| || |||||| || || || || || Sbjct 39945307 AGCGTGTGCAGGTTGATCTGTTCCGCATTGCTGCTTTCCCGAAGGTCCGTAAAGAGGATG 39945366 Query 50195 TGT--ACTACCTCCGCAGCAACATCGTGGAGTACACGCAGGACATGACCAAGCAGGCCAT 50252 | | | || |||| || | || ||||| | ||||| | | || | || || Sbjct 39945367 TTTGGATGGCCCGCGCA--AATGTTGTTGAGTATGCTCAGGAAGAGTCTAAAGAAGCTAT 39945424 Query 50253 CATGCGCCAGGAGGACTCGCGCCTCGTGACGCTGCTGGAAGCTGCAGCGGTCTCCTACCG 50312 ||| | ||| |||||||| || || || ||| |||||| ||| | || | Sbjct 39945425 TATGAAGCTGGAAGACTCGCGTCTTGTTACTCTGTTGGAAGGTGCTA---TTTCGCAGTT 39945481 Query 50313 CGTCGTGGACAGCTCGG---CTCAGCCGGGTGTCGGCGCACTGCCCAACGAGATCACCAT 50369 | | ||| | ||| ||| | |||| | || |||| ||||| || ||||| Sbjct 39945482 CCAGGCTAACAACCCGGATGCTCGTACTGGTG---GTGCTTTGCCGAACGAAATTACCAT 39945538 Query 50370 CGCCGGTTCGCACCTGATGCCGG---ACGATCTCTACACGGCGGTCACCTACACCG---A 50423 ||| ||| || || | | ||||||| || | || || | || ||| | Sbjct 39945539 CGC---TTCCGACTACATTACCGCTAACGATCTGTATTCCGCTGTTTC-TATCCCGGATA 39945594 Query 50424 CCAGCGTCAGCTGGACAGCTCGCGCCTGCTGGCGAACCCGCAGGAGTACCGCGACCTGTA 50483 || ||||||||||| || ||| | ||| || | | || ||||| ||| | || Sbjct 39945595 CC--CGTCAGCTGGATTCTTCCCGCATTCTGTGTAATACCCGTGATTACCGTGACTTCTA 39945652 Query 50484 CCGGTGGGACATCAACACGACCGGTTGGGCCTTCAAGGACTCGGTGGTCGCTGGTGAGCG 50543 ||| ||||| |||||| || |||||||| ||||| || || || |||||||| Sbjct 39945653 CCGCTGGGAAATCAACCAAACTGGTTGGGCATTCAAAGATAATGTTGTTGCTGGTGAAAC 39945712 Query 50544 CATCGTCCAGTTCGGCGAGTTCCAGATCGGCAAGTCGATCATCA-TCCCGCGTGGCACCG 50602 ||| | ||||| || |||||||| || || || |||| ||| ||| ||||| Sbjct 39945713 TATCACCACTTTCGGTGAATTCCAGATTGGTAAATCCCCAATCATTCCTGCG-GGCACAA 39945771 Query 50603 TCTACCTGACCCCGGAGCCCGAGTTCCTCGGCGTCTTCCCGGTCATGTACTCCCTCGATG 50662 | || || || || | || || ||||| || || | || || |||||||| || |||| Sbjct 39945772 TGTATCTTACACCCGCTCCTGAATTCCTGGGAGTTATGCCAGTGATGTACTCACTGGATG 39945831 Query 50663 TCGAGGAGGACAACAAGGTGGAGCGGTTCAACAAGGGCTGGGTCATGGACGAGCTGGTCG 50722 | ||||| |||||||||| || ||| | | || ||||| ||||| || || ||| Sbjct 39945832 TGGAGGAAAACAACAAGGTTGAAGACTTCCATTACGGATGGGTTATGGATGAACTTATCG 39945891 Query 50723 GCATGGCCGTGCTCAA 50738 ||||||| | ||||| Sbjct 39945892 GCATGGCTATTCTCAA 39945907 Score = 105 bits (116), Expect = 7e-18 Identities = 184/268 (69%), Gaps = 0/268 (0%) Strand=Plus/Plus Query 45227 GGGCCATCTCGGCGCGAGTTAACCAGAATTACGATGGTTGGCCATCAGACGAGCTGAAGA 45286 |||| || || | ||||| |||||||| | |||| ||||| || || || || | Sbjct 39942173 GGGCTATTTCTTCCCGAGTGAACCAGAACTTTGATGCGTGGCCGTCTAGTGAACTTAAAA 39942232 Query 45287 AGGCCGCGCACACCTTCATCGGAAAGCCGGTCTTCGTCAACCACGAGAACTACGACCCCA 45346 |||| | ||||| | || ||||| || ||||| ||||| | || | ||||||| Sbjct 39942233 AGGCTTACAAAACCTTTTTAGGCAAGCCTGTTTTCGTTAACCATGTTAATGATGACCCCA 39942292 Query 45347 AGAAGGCCCGGGGAGTTGTTGTCGCGGCTCGGTACGTCGAGAACGGCAATGACAAGTTCA 45406 ||| ||||| || |||||||| || ||| | || || |||| || || |||| || Sbjct 39942293 CGAAAGCCCGTGGCGTTGTTGTTGCTTGTCGTTTTGTTGAAGACGGTAAAGATAAGTACA 39942352 Query 45407 TCGAGGTCATTCAGGAAATCGACGCCAAGCGTTTCCCAAAGCTGGCCCACGAGATCCGCA 45466 |||| |||||||||||| |||| || || ||||| ||| || | || || Sbjct 39942353 TCGAAGTCATTCAGGAAGTCGATGCAGAGAAATTCCCTTTGCTTGCAAAAGAACTCATTG 39942412 Query 45467 CCGGCGGACTTGACTCTGTGTCGATGGG 45494 || ||| | |||||||| || ||||| Sbjct 39942413 AAGGTGGATTAGACTCTGTTTCTATGGG 39942440 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 497747044454000