Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20hellerii_20[genbank_20GCA_5F001443345.1_202015-11-13] 25 sequences; 733,802,474 total letters Query= NC_023744.1 Length=60588 Score E Sequences producing significant alignments: (Bits) Value seq18 185 3e-42 >seq18 Length=80077792 Score = 185 bits (204), Expect = 3e-42 Identities = 231/317 (73%), Gaps = 0/317 (0%) Strand=Plus/Minus Query 49727 TGTCGCACTCACCGAAGTGGCGGGAACAGCTCGGAAGCCTCGGCGGCGGTAACCATTTCA 49786 ||||||| || ||||||||||| | ||| | || | || || ||||||||||||| Sbjct 70158310 TGTCGCATTCGCCGAAGTGGCGTCAGCAGTTAGGTTCGTTGGGTGGTGGTAACCATTTCA 70158251 Query 49787 TCGAACTATGCCTGGACGAAACCGGCCGGGTGTGGCTGTTCCTGCACTCCGGGTCGCGTG 49846 | ||| | || ||||||| | ||| |||||| |||||||||||||||| || || | Sbjct 70158250 TTGAATTGTGTTTGGACGAGCAGGACCGCGTGTGGATGTTCCTGCACTCCGGTTCCCGCG 70158191 Query 49847 GCGTCGGCAACAAGATCGCCCAAAAGCACATCAAGGTCGCGCAGAAACTCATGGACCGCT 49906 | || ||||||||||| || | |||||||| ||| | || ||| || || | | Sbjct 70158190 GTGTGGGCAACAAGATTGCAAAGAAGCACATTAAGATTGCCCAGCGTCTGTGTGAGCAGT 70158131 Query 49907 GGTGGATTCAGCTCCCAAGCCCCGACCTGGCGTACTTGCCGCAAGGCACACCGGAGTTCG 49966 ||||||||| || || | | || ||||||||||| ||| || || || |||||| Sbjct 70158130 GGTGGATTCCCCTGCCCAACAAGGATTTGGCGTACTTGGTGCAGGGGACCCCAGAGTTCA 70158071 Query 49967 CCGACTATCTGCGGGAGCTGCACTGGGCGCAGCGGTTCGCGCTAGAGAACCGCGCCGAAA 50026 | ||||||| ||| || | |||||||||||||| || | ||||| | |||| Sbjct 70158070 AGGCTTATCTGCAGGATTTGAAGTGGGCGCAGCGGTTTGCCTTCCTCAACCGTGAGGAAA 70158011 Query 50027 TGATGGACCGTTTCGCT 50043 ||||||||||||||||| Sbjct 70158010 TGATGGACCGTTTCGCT 70157994 Score = 120 bits (132), Expect = 1e-22 Identities = 135/181 (75%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 49359 CACACTGGACCAGGCCAAGCAGACCGCCGGCCTGCCGTTCGTCCACCCGCATGTGGCGCT 49418 ||| || || || ||| ||||| || |||||||| | |||||||||| ||||| Sbjct 74070645 CACGCTTGAGCAAGCCCAGCAGCTGGCAAAACTGCCGTTTATTTACCCGCATGTTGCGCT 74070704 Query 49419 GATGCCCGACGCGCACGCCGGCAAGGGTTCATCGGTCGGCACCGTCATCCCGACTATCGA 49478 ||||||||||| ||| |||| || || ||||| || ||||| || || || || Sbjct 74070705 CATGCCCGACGCCCACACCGGGTTAGGGTCGTCGGTGGGAACCGTGTTCGGCACCATTGA 74070764 Query 49479 CGCCGTGATCCCGGCCGCGGTGGGCGTGGACATCGGCTGCGGGATGATCGCCGCCCGCAC 49538 |||||||| || ||||| |||||||| |||||||| ||||| ||||| |||| || || Sbjct 74070765 TGCCGTGATTCCCGCCGCCGTGGGCGTTGACATCGGATGCGGCATGATTGCCGTGCGTAC 74070824 Query 49539 C 49539 | Sbjct 74070825 C 74070825 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 193759942477500