Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20hellerii_20[genbank_20GCA_5F001443345.1_202015-11-13] 25 sequences; 733,802,474 total letters Query= NC_023747.1 Length=59672 Score E Sequences producing significant alignments: (Bits) Value seq18 176 2e-39 >seq18 Length=80077792 Score = 176 bits (194), Expect = 2e-39 Identities = 228/315 (72%), Gaps = 0/315 (0%) Strand=Plus/Minus Query 54327 TGTCTCACTCCCCGAAGTGGCGGGAGCAGCTCGGCACGCTGGGCGGTGGTAATCACTTCA 54386 |||| || || ||||||||||| ||||| | || || |||| |||||||| || |||| Sbjct 70158310 TGTCGCATTCGCCGAAGTGGCGTCAGCAGTTAGGTTCGTTGGGTGGTGGTAACCATTTCA 70158251 Query 54387 TCGAGCTGTGCCTGGACCACCTCGACCGTGTGTGGTTGTTCCTGCACTCCGGTTCGCGTG 54446 | || |||| ||||| | | ||||| |||||| ||||||||||||||||||| || | Sbjct 70158250 TTGAATTGTGTTTGGACGAGCAGGACCGCGTGTGGATGTTCCTGCACTCCGGTTCCCGCG 70158191 Query 54447 GTGTCGGTAACAAGATCGCGCAGAAGCACATTCAGGCCGCGCAGGGCTATTGCCAGGCGA 54506 |||| || |||||||| || ||||||||||| || || ||| | || || | Sbjct 70158190 GTGTGGGCAACAAGATTGCAAAGAAGCACATTAAGATTGCCCAGCGTCTGTGTGAGCAGT 70158131 Query 54507 ACGGGCTGCACGTGCCGCACAAGGATCTGGCGTACCTCGTCGAGGGCACGGTCGAGTTCG 54566 || | | | |||| |||||||| |||||||| | || |||| || |||||| Sbjct 70158130 GGTGGATTCCCCTGCCCAACAAGGATTTGGCGTACTTGGTGCAGGGGACCCCAGAGTTCA 70158071 Query 54567 ACCGCTACCTCGTTGAATTGCGTTGGGCGCAGCGGTTTGCGTACTACAACCGCGCCGAAA 54626 | || || || ||| ||||||||||||||||| | | |||||| | |||| Sbjct 70158070 AGGCTTATCTGCAGGATTTGAAGTGGGCGCAGCGGTTTGCCTTCCTCAACCGTGAGGAAA 70158011 Query 54627 TGATGGACCGATTCG 54641 |||||||||| |||| Sbjct 70158010 TGATGGACCGTTTCG 70157996 Score = 82.4 bits (90), Expect = 3e-11 Identities = 66/80 (83%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 997 GCGCCTGGGTGTGTAGCTCAATCGGTAGAGCAGCGGTCTCCAAAGCCGCCGGTTGCACGT 1056 |||| | || | |||||||||| || |||||||||||||||||| |||| ||||||| || Sbjct 68267899 GCGCATAGGGGCGTAGCTCAATTGGCAGAGCAGCGGTCTCCAAAACCGCAGGTTGCAGGT 68267958 Query 1057 TCGAGTCGTGCCGCGCCCGC 1076 || |||| || ||| || || Sbjct 68267959 TCAAGTCCTGTCGCCCCTGC 68267978 Score = 82.4 bits (90), Expect = 3e-11 Identities = 144/207 (70%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 53975 ACTCTCGCGCAGGCGCAGCAGATCGCCGATCTGCCTTTCGTTTATCCGCATGTGGCGCTG 54034 || || | ||| || |||||| | || | ||||| || |||| |||||||| ||||| Sbjct 74070646 ACGCTTGAGCAAGCCCAGCAGCTGGCAAAACTGCCGTTTATTTACCCGCATGTTGCGCTC 74070705 Query 54035 ATGCCCGATGCGCATTTCGG-TAAGGGCAGCAGTGTCGGCACGGTGATCCCAACCGAGGG 54093 |||||||| || || ||| | |||| | | || || || ||| || ||| | Sbjct 74070706 ATGCCCGACGCCCACACCGGGTTAGGGTCGTCG-GTGGGAACCGTGTTCGGCACCATTGA 74070764 Query 54094 CGCTGTGATCCCGGCGGCCGTCGGCGTCGATATTGGTTGCGGCATGATCGCGGCCCGCAC 54153 || ||||| || || ||||| ||||| || || || ||||||||||| || | || || Sbjct 74070765 TGCCGTGATTCCCGCCGCCGTGGGCGTTGACATCGGATGCGGCATGATTGCCGTGCGTAC 74070824 Query 54154 CACGTACACGGCGAACGATCTTGAGGG 54180 | | |||||| | |||| | | ||| Sbjct 74070825 CCAATTCACGGCCACCGATTTGGCGGG 74070851 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 190828743347700