Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20hellerii_20[genbank_20GCA_5F001443345.1_202015-11-13] 25 sequences; 733,802,474 total letters Query= NC_024366.1 Length=62661 Score E Sequences producing significant alignments: (Bits) Value seq18 134 6e-27 >seq18 Length=80077792 Score = 134 bits (148), Expect = 6e-27 Identities = 222/316 (70%), Gaps = 6/316 (2%) Strand=Plus/Minus Query 53800 TGTCGCACTCCCCGAAGTGGCGCGAACAACTCGGCACACTCGGCGGCGGCAACCACTTCA 53859 ||||||| || ||||||||||| | || | || | | || || || ||||| |||| Sbjct 70158310 TGTCGCATTCGCCGAAGTGGCGTCAGCAGTTAGGTTCGTTGGGTGGTGGTAACCATTTCA 70158251 Query 53860 TCGAACTGTGCGTCGACCAGCACGGCCGGCTGTGGCTGTTCCTGCATTCCGGTTCACGCG 53919 | ||| |||| | ||| |||| | ||| ||||| |||||||||| |||||||| |||| Sbjct 70158250 TTGAATTGTGTTTGGACGAGCAGGACCGCGTGTGGATGTTCCTGCACTCCGGTTCCCGCG 70158191 Query 53920 GTGTCGGCAACAAGATCGCCCAGAAGCACATCAAGATCGCGCAAGCCGAATGCGCCGAGC 53979 |||| ||||||||||| || |||||||||| ||||| || || || || | |||| Sbjct 70158190 GTGTGGGCAACAAGATTGCAAAGAAGCACATTAAGATTGCCCA--GCGTCTGTG-TGAGC 70158134 Query 53980 ATGGTGTCGAACTGCCCGGCGGCAACAAGGATCTAGCCTACCTCGTCGAGGGCGAACCGT 54039 | ||| | | | ||| || |||||||||| | || ||| | || |||| || Sbjct 70158133 A--GTGGTGGATTCCCCTGC-CCAACAAGGATTTGGCGTACTTGGTGCAGGGGACCCCAG 70158077 Query 54040 CGTTCGGCGCGTACCTCGCTGAGCTGCGTTGGGCGCAACAGTTCGCGATGTTCAACCGCA 54099 |||| || || || || || |||||||| | ||| || | ||||||| Sbjct 70158076 AGTTCAAGGCTTATCTGCAGGATTTGAAGTGGGCGCAGCGGTTTGCCTTCCTCAACCGTG 70158017 Query 54100 ACGAGATGATGGACCG 54115 | || ||||||||||| Sbjct 70158016 AGGAAATGATGGACCG 70158001 Score = 91.5 bits (100), Expect = 6e-14 Identities = 55/58 (95%), Gaps = 0/58 (0%) Strand=Plus/Plus Query 828 GTAGCTCAATTGGTAGAGCAGCGGTCTCCAAAACCGCCGGTTGCAGGTTCGAGTCCTG 885 ||||||||||||| ||||||||||||||||||||||| |||||||||||| ||||||| Sbjct 68267911 GTAGCTCAATTGGCAGAGCAGCGGTCTCCAAAACCGCAGGTTGCAGGTTCAAGTCCTG 68267968 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 200390338943550