Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20hellerii_20[genbank_20GCA_5F001443345.1_202015-11-13] 25 sequences; 733,802,474 total letters Query= NC_024391.1 Length=41941 Score E Sequences producing significant alignments: (Bits) Value seq18 114 3e-21 >seq18 Length=80077792 Score = 114 bits (126), Expect = 3e-21 Identities = 388/595 (65%), Gaps = 26/595 (4%) Strand=Plus/Minus Query 15895 CGTGGTATGACATCGTTTGGTGCATATATCAATGAAGCGTCGTTAGCGCATGAAGAAGTG 15954 |||||| | ||| | ||||| || ||| | || || || ||||| || ||||| ||||| Sbjct 30099735 CGTGGTTTCACAGCTTTTGGAGCCTATGTGAACGAGGCATCGTTGGCCAATGAACAAGTG 30099676 Query 15955 TTTGACGAGATTAAGTCACGTTGTAGTGGAACTGGTGCAAGAATA--TTGGTAGATACCA 16012 || | || || | ||||||||| ||| |||||| | || |||| |||| | Sbjct 30099675 TTCAAAGAAATCATCTCACGTTGTTCGGGAGAGGGTGCACGGATTGTTTGG--GATAGTA 30099618 Query 16013 ACCCTGACCATCCCGAGC-ATTGGTTGTTGAAAGATTATATTGAAAATACAGACCCTAA- 16070 |||| ||| ||||||| | | ||| | |||||||| | | ||| || Sbjct 30099617 ACCCAGAC-ATCCCGACCCACTGGCTCAGACGGGATTATATCAACTCTGGCGACGATATG 30099559 Query 16071 AGCAGGTATACTGAGTTACCAATTTAAGCTCGATGACAATAACTTTCTTAATGATAGATA 16130 | || || ||| || || || ||||| ||||| |||| || | ||| ||||| Sbjct 30099558 ATCA--TAGACT---TT--CATTTCAAGCTAGATGATAATACATTCATGTCTGACAGATA 30099506 Query 16131 TAAAGAGTCTATTAAGGCTTCAACACCATCAGGTATGTTCTACGAACGTAATATCAACGG 16190 || ||| ||| | | |||||| | ||| | || || || || | ||| || Sbjct 30099505 CCGCGAAAATATCAAGAATGCCACACCAGCTGGTGTATTTTATGACCGAGACATCCTTGG 30099446 Query 16191 TATGTGGGTGTCTGGCGACGGTGTAGTATATGCCGACTTTGATTTAAATGAGAATACGAT 16250 | |||||| | |||| || || || |||||| || |||||| | ||||||| | | Sbjct 30099445 TTTGTGGGCGACTGGTGAGGGCGTTGTATAT--CG----TGATTTTAGCGAGAATATGTT 30099392 Query 16251 TAAAGCAGATGAACTGGACGACATACCTATCAAAGAATACTTTGCTGGTGTCGACTGGGG 16310 | | | | || || || ||| ||| || || ||||||||| |||||||| Sbjct 30099391 TGTGGATAACGTACCAGAAGATATAACTA------AAGTCTATGCTGGTGTTGACTGGGG 30099338 Query 16311 TTACGAGCACTATGGATCTATTGTGTTAATAGGACGAGGTATAGATGGTAACTTTTATTT 16370 || || |||| ||| |||||||| | | ||| | ||| ||| ||||| | Sbjct 30099337 GTATGAACACTTTGGCTCTATTGTAGTTGTCGGAGAAACCTCAGACGGTTCAGTTTATAT 30099278 Query 16371 TATTGAGGAGCACGCACACCAATTTAAGTTTATTGATGATTGGGTGGATATTGCAAAAGA 16430 | ||||| ||||| || |||| || ||||| |||||| || |||| ||||| Sbjct 30099277 CTTAGAGGAACACGCTCATCAATACAAAGAGATTGACTTTTGGGTAGACCTTGCTAAAGA 30099218 Query 16431 TATTGTAAGTAGATATGGCAATATTAATTTTTACTGCGATACTGCACGACCTGAA 16485 || || ||||||||||||||| |||| |||| |||||||||||| Sbjct 30099217 AATCAAAAAACGATATGGCAATATTACGTTTTGGGCAGATAGCGCACGACCTGAA 30099163 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 134089560192150