Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20hellerii_20[genbank_20GCA_5F001443345.1_202015-11-13] 25 sequences; 733,802,474 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq25 324 1e-83 seq18 141 9e-29 seq13 136 4e-27 seq16 118 1e-21 >seq25 Length=32766887 Score = 324 bits (358), Expect = 1e-83 Identities = 990/1512 (65%), Gaps = 54/1512 (4%) Strand=Plus/Plus Query 148260 TTCACCACCTGAAACTCGCCGGCGAGCACGCGCCGCAGATACACGTTGCTCGTAAACGGT 148319 || || | ||| ||||| |||| ||||| | || || | |||||| || ||| Sbjct 10519975 TTGACGATCTGGAACTCTCCGGACAGCACCCTGCGGGTGTAGATGTTGCTGGTGTACGCC 10520034 Query 148320 TCAAACGACTCGTTGTTGCCCAAAATCTGCGCGGTCGTTGCCGTGGGCATGTACGCTACC 148379 || | |||||||||||||||| ||||| ||||| | |||||||||||| ||| | | Sbjct 10520035 TCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGACGCCGTGGGCATGGGCGCCAGC 10520094 Query 148380 AGCAGCGAGTTGCGCAAACCGCGATTTTTTATTTTGCGCTTCAGAGCCGCCCAGTCCCAG 148439 ||||| ||| | || ||| | || || || |||||| | ||||||||| Sbjct 10520095 AGCAGGCTGTTCCTCACGCCGTGTTTGCCGATCTTTTCCTTCAGCAGCTTCCAGTCCCAA 10520154 Query 148440 AGCGGCGACGGTGTCACGTTCCACATGTCGTACTGCAGAATGCCGCGGCTAGCGGGGCTG 148499 || | ||| ||| | ||||||||||||||| || ||||| ||| |||| | Sbjct 10520155 AGGTCGGTCGGCGTCTTCTCCCACATGTCGTACTGGAGGATGCCCTTGCTGACGGGCGAG 10520214 Query 148500 CCCTCGTACGAGCTGTACGGTCCGTGCGCCGCCGCCAGTTCGCAGCTCGCCTCGAGCGCG 148559 |||||||||| ||| || ||| || | || || || |||||||| ||||| || ||| Sbjct 10520215 CCCTCGTACGTCTCGTAGGGGCCGAGCTCTGCGGCGAGCTCGCAGCTGGCCTCCAGGGCG 10520274 Query 148560 CCGTAGTAAATCGTCTCGGCAATTTGCCTGTTGAGCAGCGCCGCCGACTCG---CTTTCG 148616 ||| ||| || |||||| || || ||||||||||| || ||| |||||| Sbjct 10520275 GCGTGGTAGATGGTCTCGAACATCTGGATGTTGAGCAGCTGAGC---TTCGGGACTTTCG 10520331 Query 148617 TACGGCATACGCAGCCGCACAAACGCGTCGGCAAGGCCCTGTACGCCCACGCCAATGGGC 148676 | || |||| | | | || |||||||| || ||||| ||||| | || || ||| Sbjct 10520332 AAAGGGTGCCGCATCAGGATGAAGGCGTCGGCCAGACCCTGGACGCCGATCCCGATCGGC 10520391 Query 148677 CGGTGTTTAATGTTGGAGAGGCGCGCGCTCTCG---AGCGGATAGTGGTTGCGGTCGATG 148733 | ||| ||||||| || | || ||| ||| | ||| |||| |||| ||||||| Sbjct 10520392 CTGTGGCGCTTGTTGGA-AGTCTCG-GCT-TCGGGAACCGGGTAGTAGTTGATGTCGATG 10520448 Query 148734 ATCTTGTCAAGATTGCGCACCACCACCTTTGTAATTCTGCGCAGCAATTCAAAATCGTAC 148793 ||||||| || || ||| | ||||| || | | |||| | || ||| | Sbjct 10520449 ATCTTGTTGAGGTTTTTCACGATTACCTTGGTGACGGAGGCCAGCTTCTTGAAGTCGAAA 10520508 Query 148794 TTGTCATCT------ACGATGCATCGGTTCACGGCGATAGAGGCTAGATTGCACACGGCC 148847 | ||| ||| | ||| ||| | |||||| ||||| || ||||| |||||| Sbjct 10520509 GTCCGCTCTGGCGTGACG-TACAT--GTTGAGGGCGATGGAGGCCAGGTTGCAGACGGCC 10520565 Query 148848 GTCTCATCCGGGGCGCTGTACTCTACGATCTCGGCGCACAGATTGCTGCATTTGATCACG 148907 ||| ||| | | ||||||| || | ||| | ||| || |||||||| ||||| | Sbjct 10520566 ACCTCGTCCTTGCTGGTGTACTCCACCACCTCCGTGCAGAGGTTGCTGCACTTGATGGTG 10520625 Query 148908 CCCACGTTCTTTTGATTGCTCTTGCTGTTGCACGCGTCCTTGTACAGCATGTACGGTCCG 148967 |||| ||||| || |||||||| |||||||| ||||||||||| |||||||| || Sbjct 10520626 CCCAGGTTCTGCTGGTTGCTCTTCCTGTTGCAAGCGTCCTTGTAGAGCATGTAGGGGGTC 10520685 Query 148968 CCAGTTTCCACCTGCGTTTCCACTAT---GAACC---GATGCAGGTCCTGCGCGCGCACT 149021 || ||||| ||| | || | || | ||| | ||| | ||| | | | | || Sbjct 10520686 CCGGTTTCGGTCTGGGACTCGATGATGGCGTACCAGAGCTGCTGCGCCTTCAC-CACCCT 10520744 Query 149022 TGCTGCTCGTAGCGACCCTCCTGCTCGTATAAAGTATACAGCCGCTCGAACGCCTCGCCG 149081 | | | | | || |||| ||| ||| || || ||| ||||||| |||| || Sbjct 10520745 T--TTCAC---TCTCCCTTCCTTCTCATATTTGGTGTAGAGCTTCTCGAACTCCTCTCCC 10520799 Query 149082 TAGCAATCGTCGAGACCGGGGCACTTGTGCGGGCACATGAGCGACCACACGCCGTCCGCG 149141 |||| ||||| || || || |||| | || ||||| | ||||| | || Sbjct 10520800 CAGCACTCGTCCAGCCCAGGACACTCGCTGGGACACATCAAGGACCAGTCCTGGTTGCTC 10520859 Query 149142 TACACGCGCTTCATAAACAGATCGGGCACCCAGAGCGCGTACATGAGGTCGC--GCGCCT 149199 | ||| | |||||| ||||| || || | ||| | ||||| | ||||| | || | Sbjct 10520860 TCCACTCTCTTCATGAACAGGTCAGGGATCCACAAGGCGTAGAAAAGGTCTCTGGCTCTC 10520919 Query 149200 TGCAGTCTTCGGCGCCCATGTTGCGGCGCAGGTTGAGCACGCTGAATATGTCCGCGTGCC 149259 ||| || || || |||| ||| | || | | ||| | ||| ||||| Sbjct 10520920 TGC--TCCTCCTTTCCTGTGTTCTTCTTCAGCTCCAGGAAGTCGAACACGTCGAAGTGCC 10520977 Query 149260 ACGGCTCAATGTACACCGCGAGCGCGCC------CTTGCGCTTGCCGCCCTGGTCGACGT 149313 | ||||| | |||| |||| || || |||| |||||||||||||| |||| Sbjct 10520978 ATGGCTCCAGATACATGGCGAAGGCCCCGGGTCTCTTG---TTGCCGCCCTGGTCAACGT 10521034 Query 149314 GGCGCACCATGTTGTTAAACACTCGAACCATAGGTTCAATGCCACTGGCAGTGCCGTTAG 149373 || | ||||||| | |||| | ||| || | | || ||| ||||||| | Sbjct 10521035 ACCGAGCGGTGTTGTTGTAAACTCTCAGCATCGGCACCAACCCGTTGGAGTTGCCGTTGG 10521094 Query 149374 TAGAGCTAATGCGACTGCCGCGCGCTCGCACTTTGTGCACGTTGACGCCGATGCCGCCGC 149433 | ||| || || || ||| | | ||| |||||||| ||||| Sbjct 10521095 TGCCTGCGATGTAGCTTCCCGTCGATCGGATGCAGCTCACCGCCACGCCGATCCCGCCAG 10521154 Query 149434 CGTACTTTGAGATGGCCGCGCAGTCGCCGAGCGTCGAGTAGATGCCCTCGATGCTGTCGC 149493 || |||| || ||| |||||| | || || ||||||||| |||||||||||| Sbjct 10521155 CGGACTTGGAAATGAGCGCGCACTGCTTCAGGGTGTCGTAGATGCCTTCGATGCTGTCGT 10521214 Query 149494 GCTTCATGGTCAGCAGAAAGCACGAGCACATTTGCGGAAAACGCGTGCCGGCCGCGAACA 149553 |||||||| ||||| ||||| | ||| ||||| || ||||| ||| | Sbjct 10521215 CCTTCATGGCGAGCAGGAAGCAACTGGACAGCTGCGGCCGGTTGGTCCCGGCGTTGAAGA 10521274 Query 149554 TGGTGGGGCTGGCGTGTGTAAAATATTTCTGGCTCATCATCTCGTACGACTCGAGCACGC 149613 ||| || |||||| || || | |||| || | | ||| | ||||| || Sbjct 10521275 GGGTCGGAGAGGCGTGGGTGAACCACTTCTCCGACAGGAGGTTGTAGGTCTCGACGGCGG 10521334 Query 149614 GGTCCATGTCATCG-CCATGGATGCCTATGGCGACGCGCATCAGCATATGCTGCGGTCGC 149672 ||| ||||| ||| || ||||| || | | || | ||| ||||| |||||||||||| Sbjct 10521335 CGTCGATGTC-TCGCCCGTGGATCCCAACCGACACCCTCATGAGCATGTGCTGCGGTCGC 10521393 Query 149673 TCCGCCACTTT---GTTTCCAATTTTGAGCAAGTAGCCGTTTTCTAGTGTCTTGTAGCCA 149729 || |||||||| ||| || || |||| |||| || || |||||| |||| Sbjct 10521394 TCGGCCACTTTCCCGTT---GATCTTCAGCAGGTAGGAACGCTCCAGAGTCTTGAAGCCG 10521450 Query 149730 AAGTACTTGTAG 149741 ||| | |||||| Sbjct 10521451 AAGAAGTTGTAG 10521462 >seq18 Length=80077792 Score = 141 bits (156), Expect = 9e-29 Identities = 153/200 (77%), Gaps = 2/200 (1%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||||||||| ||||| |||||||| ||| || ||| | | | ||||| |||||||||| Sbjct 51870075 GGTGGACTCCTTCTGGATATTGTAGTCGGACAGGGTGCGGCCA-TCCTCCAGCTGCTTGC 51870133 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || | || |||| ||||||||| || |||||||| ||||| || || ||| || Sbjct 51870134 CAGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGGAGCTTGGCCT 51870193 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 ||| | ||||| ||||| ||||||| || || | ||||| ||||||||| || || | Sbjct 51870194 TGACGTTCTCAATGGTGTCACTGGGCTCAACCTCCAGGGTGATGGTTTTGCCAGTGAGGG 51870253 Query 133642 TTTTTACGAAAATCTGCATG 133661 | || ||||| ||||||||| Sbjct 51870254 TCTTGACGAAGATCTGCATG 51870273 >seq13 Length=27080333 Score = 136 bits (150), Expect = 4e-27 Identities = 151/199 (76%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||||||||| ||||| |||||||| ||| || ||| | | | || || |||||||| | Sbjct 11062560 GGTGGACTCCTTCTGGATATTGTAGTCGGACAGGGTGCGGCCA-TCTTCCAGCTGCTTTC 11062618 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || | || |||| ||||||||| || |||||||| ||||| || |||||| || Sbjct 11062619 CGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGGATCTTGGCCT 11062678 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | ||||| || || |||||||||| || | ||||| |||||||||||| || | Sbjct 11062679 TAACGTTCTCAATGGTATCACTGGGCTCCACCTCCAGGGTGATGGTTTTGCCGGTGAGGG 11062738 Query 133642 TTTTTACGAAAATCTGCAT 133660 |||| || || |||||||| Sbjct 11062739 TTTTCACAAAGATCTGCAT 11062757 Score = 131 bits (144), Expect = 2e-25 Identities = 150/199 (75%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 |||||| |||||||| || ||||| ||| || ||| | | | || || ||||| |||| Sbjct 11060549 GGTGGATTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCA-TCTTCCAGCTGTTTGC 11060607 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || | || |||| ||||||||| || |||||||| ||||| || |||||| || Sbjct 11060608 CAGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGGATCTTGGCCT 11060667 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 ||| | ||||| |||||| |||| ||||| || | ||||| |||||||||||| || | Sbjct 11060668 TGACGTTCTCAATGGTGTCGCTGGGTTCCACCTCCAGGGTGATGGTTTTGCCGGTGAGGG 11060727 Query 133642 TTTTTACGAAAATCTGCAT 133660 | || || || || ||||| Sbjct 11060728 TCTTGACAAAGATTTGCAT 11060746 Score = 86.0 bits (94), Expect = 6e-12 Identities = 79/100 (79%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 148864 TGTACTCTACGATCTCGGCGCACAGATTGCTGCATTTGATCACGCCCACGTTCTTTTGAT 148923 |||| || || ||||| | ||| ||||||||| | ||||| ||||| || | || | Sbjct 15278733 TGTATTCAACAATCTCTGTGCAGAGATTGCTGGACTTGATGGTGCCCAGATTTTGCTGGT 15278792 Query 148924 TGCTCTTGCTGTTGCACGCGTCCTTGTACAGCATGTACGG 148963 || |||| |||||||| ||||||||||| ||||||||||| Sbjct 15278793 TGGTCTTCCTGTTGCAGGCGTCCTTGTAGAGCATGTACGG 15278832 >seq16 Length=24388307 Score = 118 bits (130), Expect = 1e-21 Identities = 147/199 (74%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||||||||| ||||| | ||||| || || ||| | | | || || ||||| |||| Sbjct 2613243 GGTGGACTCCTTCTGGACGTTGTAGTCCGACAGGGTGCGGCCA-TCTTCCAGCTGTTTGC 2613185 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || | || |||| ||||||||| ||||| |||||||| || || |||||| || Sbjct 2613184 CAGCAAAGATCAGCCTCTGCTGGTCAGGAGGAATGCCTTCTTTATCCTGAATCTTTGCCT 2613125 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | ||||| || || |||||||||| || | ||||| ||| || || || || | Sbjct 2613124 TCACGTTCTCAATGGTATCACTGGGCTCCACCTCCAGGGTGATGGTCTTCCCAGTGAGGG 2613065 Query 133642 TTTTTACGAAAATCTGCAT 133660 |||| |||||||||||||| Sbjct 2613064 TTTTCACGAAAATCTGCAT 2613046 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483420648931000