Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20hellerii_20[genbank_20GCA_5F001443345.1_202015-11-13] 25 sequences; 733,802,474 total letters Query= NC_024696.1 Length=180800 Score E Sequences producing significant alignments: (Bits) Value seq4 116 4e-21 >seq4 Length=29445952 Score = 116 bits (128), Expect = 4e-21 Identities = 228/332 (69%), Gaps = 4/332 (1%) Strand=Plus/Minus Query 162642 CACCATCTCTAGATTGGTCTTAAGGGGAAAGTCGGTGCCGCAGAGATTAATAACATATTT 162701 ||||||||| ||||| |||| ||||||||| || || ||| ||| | || ||| | Sbjct 9217973 CACCATCTCCCTGTTGGTTTTAATGGGAAAGTCTGTCCCACAGGTATTCAAAAGGTATCT 9217914 Query 162702 CCACTTAACG-CTGAGTCCGTACAGATCCTGTAGACAGTTCAGATCGGCCTGGACGCGAC 162760 ||||| ||| | |||| | |||||| | | ||||||||||| ||||| || | Sbjct 9217913 CCACTGAACTTCAGAGTGCAG-CAGATCTTTCATGCAGTTCAGATCTGCCTGTACTCTGG 9217855 Query 162761 TCCACGACGCGTACACGACGCTCTCCAACCTAGTGGCGACAAAGACATTGTCGAAACACG 162820 ||| || || ||||| || || || || || |||| ||||| |||||| || || | Sbjct 9217854 ACCATGAAGCATACACAACACTTTCTAATTTACTGGCTACAAAAACATTGGGAAAGCAGG 9217795 Query 162821 AAACTATCCCCATCACGGCC-AGTGAGAACATCGGGTCCGCTTTCCTATCTACGTGTACG 162879 ||||||| | |||| ||| |||| || | | || | ||| || | || || Sbjct 9217794 AAACTATTTTCTTCACAGCCTTGTGAAAAGA-CAGGGAAGACTTCAGGTCAATATGGACA 9217736 Query 162880 CAGTATAGATTCTGAGGGGCGTAGATGGCCCTCAGTAATCTCTCGAACATCTCTATCTTA 162939 ||||| | ||||| || || || || | | || | || || |||||||| ||||| Sbjct 9217735 CAGTAGATGTTCTGTGGAGCATAAATAGATCGTAGGAGTCGTTCAAACATCTCAATCTTC 9217676 Query 162940 TGGTGTACCACGATAGAATACGCTATGGGGAA 162971 | ||||| ||| || || || || ||||| || Sbjct 9217675 TCGTGTATCACTATGGAGTATGCAATGGGAAA 9217644 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578431819240000