Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20hellerii_20[genbank_20GCA_5F001443345.1_202015-11-13] 25 sequences; 733,802,474 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq16 98.7 2e-15 seq13 96.9 8e-15 >seq16 Length=24388307 Score = 98.7 bits (108), Expect = 2e-15 Identities = 138/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| ||||| || || || ||||| |||| ||||| ||| || | || Sbjct 2613061 AAAACCCTCACTGGGAAGACCATCACCCTGGAGGTGGAGCCCAGTGATACCATTGAGAAC 2613120 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||||||| || |||||||| ||| || ||| || || || ||||| Sbjct 2613121 GTGAAGGCAAAGATTCAGGATAAAGAAGGCATTCCTCCTGACCAGCAGAGGCTGATCTTT 2613180 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || || ||| |||||||||| | || || | || |||||||||||||| ||||| Sbjct 2613181 GCTGGCAAACAGCTGGAAGATGGCCGCACCCTGTCGGACTACAACGTCCAGAAGGAGTCC 2613240 Query 206365 ACTCTTCACCTTGT 206378 || || ||||| || Sbjct 2613241 ACCCTCCACCTGGT 2613254 >seq13 Length=27080333 Score = 96.9 bits (106), Expect = 8e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| ||||| ||||| || ||||| ||||| |||| ||||| ||| Sbjct 11062754 CAGATCTTTGTGAAAACCCTCACCGGCAAAACCATCACCCTGGAGGTGGAGCCCAGTGAT 11062695 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | || || ||| ||||| || || || || || || || ||| || Sbjct 11062694 ACCATTGAGAACGTTAAGGCCAAGATCCAGGATAAGGAGGGCATCCCCCCTGACCAGCAG 11062635 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 || || ||||| |||||||||||| |||||||||| | || || |||| ||||| || Sbjct 11062634 AGGCTGATCTTTGCCGGAAAGCAGCTGGAAGATGGCCGCACCCTGTCCGACTACAATATC 11062575 Query 206353 CAGAAAGAGTCTACTCTTCACCT 206375 ||||| ||||| || |||||||| Sbjct 11062574 CAGAAGGAGTCCACCCTTCACCT 11062552 Score = 86.0 bits (94), Expect = 1e-11 Identities = 68/82 (83%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 204767 AGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTTCCATCTTCCAGC 204826 |||||||| || ||||| ||||||| ||| ||||| | || || | |||||||||||| Sbjct 11062552 AGGTGAAGGGTGGACTCCTTCTGGATATTGTAGTCGGACAGGGTGCGGCCATCTTCCAGC 11062611 Query 204827 TGCTTTCCGGCGAAGATAAGCC 204848 ||||||||||| ||||| |||| Sbjct 11062612 TGCTTTCCGGCAAAGATCAGCC 11062633 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181820421448025