Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20hellerii_20[genbank_20GCA_5F001443345.1_202015-11-13] 25 sequences; 733,802,474 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq25 215 5e-51 seq16 107 2e-18 >seq25 Length=32766887 Score = 215 bits (238), Expect = 5e-51 Identities = 985/1535 (64%), Gaps = 44/1535 (3%) Strand=Plus/Plus Query 146893 TTGACCACTTGAAACTCGCCCGCCAGCACACGTCTGAGATACACATTGCTAGTGAAAGGC 146952 ||||| | || ||||| || | |||||| | | | || | ||||| ||| | | | Sbjct 10519975 TTGACGATCTGGAACTCTCCGGACAGCACCCTGCGGGTGTAGATGTTGCTGGTGTACGCC 10520034 Query 146953 TCAAAAGACTCATTATTGCCTAATATTTGGGCCGTGGTTGCGGTAGGCATGTACGCCACC 147012 || | ||||| || ||||| | || ||||| |||| || || |||||| ||||| | Sbjct 10520035 TCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGACGCCGTGGGCATGGGCGCCAGC 10520094 Query 147013 AACAATGAATTTCGCAGACCGTACGCACGGATGTTGTCCTTCAA-AGTTTGCCAGTCCCA 147071 | || || | || |||| | ||| || ||||||| || || ||||||||| Sbjct 10520095 AGCAGGCTGTTCCTCACGCCGTGTTTGCCGATCTTTTCCTTCAGCAGCTT-CCAGTCCCA 10520153 Query 147072 CA--TCGACGAGGGCGTCACGTTCCACATGTCGTACTGGAGCACTCCTCGACTGGCGGGA 147129 | ||| | |||||| | |||||||||||||||||| | || ||| |||| Sbjct 10520154 AAGGTCG--GTCGGCGTCTTCTCCCACATGTCGTACTGGAGGATGCCCTTGCTGACGGGC 10520211 Query 147130 CTGCCAGCGAACGTAGTGTAGCTTCCGTCGCGCTGCGCCAAT-TCACAGCTTGCCTCGAG 147188 ||| || |||| |||| ||| || ||||| | | || ||||| ||||| || Sbjct 10520212 GAGCCCTCGTACGTCTCGTAGGGGCCGA-GCTCTGCGGCGAGCTCGCAGCTGGCCTCCAG 10520270 Query 147189 CGCTCCATAGTATATGGTTTCGGCGATTTGTTTGTTTAGGACGGTCGCTTCTTCGCTCTC 147248 || | | ||| ||||| ||| || || |||| || | ||||| || || Sbjct 10520271 GGCGGCGTGGTAGATGGTCTCGAACATCTGGATGTTGAGCAGCTGAGCTTCGGGACTTTC 10520330 Query 147249 GTAAGGCATACGCAGAAGCACAAAGGCATCGGCCAAACCCTGGATACCGACGCCGATAGG 147308 | |||| |||| || | ||||| ||||||| |||||||| |||| ||||| || Sbjct 10520331 GAAAGGGTGCCGCATCAGGATGAAGGCGTCGGCCAGACCCTGGACGCCGATCCCGATCGG 10520390 Query 147309 TCGATGCTTTTCGTTG-----CTGCGCTTCGCGCTCGCTATGGGATAGTGGTTGCGATCA 147363 | || | |||| || |||||| | | || |||| |||| || Sbjct 10520391 CCTGTGGCGCTTGTTGGAAGTCTCGGCTTCGGGAACC-----GGGTAGTAGTTGATGTCG 10520445 Query 147364 ATAATCTTGTTGAGGTTACGCACTACAACTTTAGTTATTGTTTTGAGTTTCTCGAAATCA 147423 || |||||||||||||| ||| | || || || | | || |||| ||| || Sbjct 10520446 ATGATCTTGTTGAGGTTTTTCACGATTACCTTGGTGACGGAGGCCAGCTTCTTGAAGTCG 10520505 Query 147424 TAAGTCCCGTCTT-CGACACGTACGCATTGGTTCACGGCGATAGACGCCAGATTGCAGAC 147482 |||||| ||| || |||||| || ||| | |||||| || ||||| |||||||| Sbjct 10520506 AAAGTCCGCTCTGGCGTGACGTAC--AT--GTTGAGGGCGATGGAGGCCAGGTTGCAGAC 10520561 Query 147483 GGCCGTCTCTTCGGCGTCGCTGTACTGCACGATTTCGGCGCACAGGTTGCTGCATTTTAT 147542 |||| ||| || | | |||||| ||| | || | ||| ||||||||||| || || Sbjct 10520562 GGCCACCTCGTCCTTGCTGGTGTACTCCACCACCTCCGTGCAGAGGTTGCTGCACTTGAT 10520621 Query 147543 GACTCCCAAATTTTGCTGATTGCTTTTCCGATTGCACGCGTCTTTGAAGAGCATGTACGG 147602 | |||| || ||||| ||||| |||| ||||| ||||| ||| |||||||||| || Sbjct 10520622 GGTGCCCAGGTTCTGCTGGTTGCTCTTCCTGTTGCAAGCGTCCTTGTAGAGCATGTAGGG 10520681 Query 147603 TCCGCCGGTCTCGACTTGCGTTTCAACGATAAACCTA-TGCAGGTCCTGCGCTCGCACC- 147660 ||||| ||| || | || | ||| | || || | |||||| |||| Sbjct 10520682 GGTCCCGGTTTCGGTCTGGGACTCGATGAT-GGCGTACCAGAGCTGCTGCGCCTTCACCA 10520740 Query 147661 CGCTGCCGATAGCGGCCCTCGTTTTCGTACCGCTCGTACAACCGCTCAAACTCGTCGCCG 147720 | || | | || || || || || ||| | | ||| ||||| || || Sbjct 10520741 CCCTTTTCA-CTCTCCCTTCCTTCTCATATTTGGTGTAGAGCTTCTCGAACTCCTCTCCC 10520799 Query 147721 TAGCAATCGGCAAGGCCGGGACACT-GATGCGGACACATCAGCGACCACATGTCGTCCGC 147779 |||| ||| | || || ||||||| | || |||||||||| ||||| | || Sbjct 10520800 CAGCACTCGTCCAGCCCAGGACACTCGCTG-GGACACATCAAGGACCAGTCCTGGTTGCT 10520858 Query 147780 GTTAACGCGTCGCATAAACAGATCCGGCACCCACAGCGCGTACATAAGATCGC--GCGCT 147837 | || | ||| ||||| || || | ||||| ||||| | ||| || | || || Sbjct 10520859 CTCCACTCTCTTCATGAACAGGTCAGGGATCCACAAGGCGTAGAAAAGGTCTCTGGCTCT 10520918 Query 147838 TTGCAATCCTCGGCGCCCATGTTGCGTTTCAAATTAAGCACGCTATAGATGTCGGCGTGC 147897 ||| ||||| || |||| |||| | || | | | | |||| |||| Sbjct 10520919 CTGC--TCCTCCTTTCCTGTGTTCTTCTTCAGCTCCAGGAAGTCGAACACGTCGAAGTGC 10520976 Query 147898 CAGGGTTCAATGTAGACGGCCAGCGCACC---TTTACGCTTTCCGCCCTGGTCGACATGG 147954 || || || | || | ||| | || || | | || ||||||||||| || | Sbjct 10520977 CATGGCTCCAGATACATGGCGAAGGCCCCGGGTCTCTTGTTGCCGCCCTGGTCAACGTAC 10521036 Query 147955 CGCACCATGTTGTTAAACACGCGCACCATGGGTTCCAGGCCGCTCGCAGTGCCGTTGGTG 148014 || | ||||||| | || | || ||| || ||| ||| | | ||||||||||| Sbjct 10521037 CGAGCGGTGTTGTTGTAAACTCTCAGCATCGGCACCAACCCGTTGGAGTTGCCGTTGGTG 10521096 Query 148015 GAATTGATCTTGCTGCCGCGGGCTCGCACTTCGTGCACGTTAACGCCAATGCCGCCGCCG 148074 ||| | ||| || | ||| | | ||| ||||| || ||||| || Sbjct 10521097 CCTGCGATGTAGCTTCCCGTCGATCGGATGCAGCTCACCGCCACGCCGATCCCGCCAGCG 10521156 Query 148075 TACTTTGATATGGCAGCGCAATCGCCCAATGTCGTGTAGATGCCGTCGATGCTGTCGTTT 148134 |||| || ||| ||||| | || || ||||||||| ||||||||||||| Sbjct 10521157 GACTTGGAAATGAGCGCGCACTGCTTCAGGGTGTCGTAGATGCCTTCGATGCTGTCGTCC 10521216 Query 148135 TTGACGCCAAGCAAAAAACACGAACACATTTGCGGAATCCG--CGTTCCCGCCG-AGAAA 148191 || | | | |||| || || ||| ||||| ||| | ||||| || ||| Sbjct 10521217 TTCATGGCGAGCAGGAAGCAACTGGACAGCTGCGG---CCGGTTGGTCCCGGCGTTGAAG 10521273 Query 148192 AGGGTGGGACTCGCGTGCGTAAACAATTTTTGACTCATCATGCGATACGTCTCAATAGCG 148251 ||||| ||| ||||| || ||| | || | || | | || ||||| | ||| Sbjct 10521274 AGGGTCGGAGAGGCGTGGGTGAACCACTTCTCCGACAGGAGGTTGTAGGTCTCGACGGCG 10521333 Query 148252 TCTTCGATGTCGTCG-CCGTGAATGCCCAGCGCGACGCGCATGAGCATGTGCTGTGGTCG 148310 | |||||||| ||| ||||| || || | || || | ||||||||||||||| ||||| Sbjct 10521334 GCGTCGATGTC-TCGCCCGTGGATCCCAACCGACACCCTCATGAGCATGTGCTGCGGTCG 10521392 Query 148311 TTCGGCAACTTGATTGTTGATCTTGAGAAGATATCCATTTTCGAGGGTTTTGTAACCAAA 148370 ||||| |||| ||||||||| || || || | || || || ||| | || || Sbjct 10521393 CTCGGCCACTTTCCCGTTGATCTTCAGCAGGTAGGAACGCTCCAGAGTCTTGAAGCCGAA 10521452 Query 148371 GTACTTGTAATCAAAATCTAGCTCGTAAGCGATGG 148405 | | ||||| |||||| |||||| ||||| Sbjct 10521453 GAAGTTGTAGGAGAAATCTCTGTCGTAAATGATGG 10521487 >seq16 Length=24388307 Score = 107 bits (118), Expect = 2e-18 Identities = 140/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||| || || | ||||||||| || ||| || |||||| |||||||| || | | Sbjct 2613239 GACTCCTTCTGGACGTTGTAGTCCGACAGGGTGCGGCCATCTTCCAGCTGTTTGCCAGCA 2613180 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| || | ||| || || ||||| |||||||||||||| ||| ||| |||| Sbjct 2613179 AAGATCAGCCTCTGCTGGTCAGGAGGAATGCCTTCTTTATCCTGAATCTTTGCCTTCACG 2613120 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | ||||| | |||||||| || | || | || || ||||| || ||||| Sbjct 2613119 TTCTCAATGGTATCACTGGGCTCCACCTCCAGGGTGATGGTCTTCCCAGTGAGGGTTTTC 2613060 Query 132110 ATGAAAATCTGCAT 132123 | |||||||||||| Sbjct 2613059 ACGAAAATCTGCAT 2613046 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476611051059000