Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20hellerii_20[genbank_20GCA_5F001443345.1_202015-11-13] 25 sequences; 733,802,474 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq24 179 5e-39 seq18 167 3e-35 seq25 145 1e-28 seq14 116 5e-20 seq22 95.1 2e-13 >seq24 Length=19721749 Score = 179 bits (198), Expect = 5e-39 Identities = 178/229 (78%), Gaps = 6/229 (3%) Strand=Plus/Minus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| |||||||| |||||| |||| |||| || |||| ||||| Sbjct 534909 TACAAGGTGCTGAAGCAGGTCCACCCCGATACCGG-----CATC-TCGTCCAAGGCCATG 534856 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 |||||||||||||| ||||||||||| |||| ||||||| | ||||||| ||| Sbjct 534855 AGCATCATGAACTCGTTCGTCAACGACATCTTCGAGCGCATCGCCTCCGAGGCGTCCCGC 534796 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||| | || |||||||||| ||| ||| | | | ||||||||||| ||||||||| Sbjct 534795 CTGGCTCACTACAACAAGCGCTCCACCATCACCTCCAGGGAGATCCAGACGGCCGTGCGC 534736 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 || | ||| ||| || ||||||| ||||||||| ||||||||||||| Sbjct 534735 CTCCTGCTGCCCGGAGAGCTGGCCAAGCACGCCGTGTCCGAGGGCACCA 534687 Score = 170 bits (188), Expect = 3e-36 Identities = 177/231 (77%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 724912 TCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCA 724971 ||||||||||||| |||||||| |||||| |||| |||| || |||| ||| Sbjct 3167744 TCTACAAGGTGCTGAAGCAGGTCCACCCCGATACCGG-----CATC-TCGTCCAAGGCCA 3167797 Query 724972 TGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTC 725031 || |||||||||||||||||||||||||| | || ||||||| | ||||||| | Sbjct 3167798 TGAGCATCATGAACTCGTTTGTCAACGACATCTTTGAACGCATCGCCTCCGAGGCTTCCC 3167857 Query 725032 GCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGC 725091 | ||||| | | |||||||||| ||| ||| | | | ||||||||||| ||||||| Sbjct 3167858 GTCTGGCTCATTACAACAAGCGCTCCACCATCACCTCCAGGGAGATCCAGACGGCCGTGC 3167917 Query 725092 GCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 |||| | ||| ||| || ||||||| ||||||||| || |||||||||| Sbjct 3167918 GCCTCCTGCTGCCCGGTGAGCTGGCCAAGCACGCCGTGTCTGAGGGCACCA 3167968 Score = 170 bits (188), Expect = 3e-36 Identities = 177/231 (77%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 724912 TCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCA 724971 ||||||||||||| |||||||| |||||| |||| |||| || |||| ||| Sbjct 3185760 TCTACAAGGTGCTGAAGCAGGTCCACCCCGATACCGG-----CATC-TCGTCCAAGGCCA 3185707 Query 724972 TGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTC 725031 || |||||||||||||||||||||||||| | || ||||||| | ||||||| | Sbjct 3185706 TGAGCATCATGAACTCGTTTGTCAACGACATCTTTGAACGCATCGCCTCCGAGGCTTCCC 3185647 Query 725032 GCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGC 725091 | ||||| | | |||||||||| ||| ||| | | | ||||||||||| ||||||| Sbjct 3185646 GTCTGGCTCATTACAACAAGCGCTCCACCATCACCTCCAGGGAGATCCAGACGGCCGTGC 3185587 Query 725092 GCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 |||| | ||| ||| || ||||||| ||||||||| || |||||||||| Sbjct 3185586 GCCTCCTGCTGCCCGGTGAGCTGGCCAAGCACGCCGTGTCTGAGGGCACCA 3185536 Score = 165 bits (182), Expect = 1e-34 Identities = 176/231 (76%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 724912 TCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCA 724971 ||||||||||||| |||||||| |||||| |||| |||| || |||| ||| Sbjct 3170075 TCTACAAGGTGCTGAAGCAGGTCCACCCCGATACCGG-----CATC-TCGTCCAAGGCCA 3170128 Query 724972 TGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTC 725031 || |||||||||||||| ||||||||||| | || ||||||| | ||||||| | Sbjct 3170129 TGAGCATCATGAACTCGTTCGTCAACGACATCTTTGAGCGCATCGCCTCCGAGGCTTCCC 3170188 Query 725032 GCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGC 725091 | ||||| | | |||||||||| ||| ||| | | | ||||||||||| ||||||| Sbjct 3170189 GTCTGGCTCATTACAACAAGCGCTCCACCATCACCTCCAGGGAGATCCAGACGGCCGTGC 3170248 Query 725092 GCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 |||| | ||| ||| || ||||||| ||||||||| || |||||||||| Sbjct 3170249 GCCTCCTGCTGCCCGGTGAGCTGGCCAAGCACGCCGTGTCTGAGGGCACCA 3170299 >seq18 Length=80077792 Score = 167 bits (184), Expect = 3e-35 Identities = 175/229 (76%), Gaps = 6/229 (3%) Strand=Plus/Minus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| |||||||| |||||| |||| || |||||||| | ||||| Sbjct 40415133 TACAAGGTGCTGAAGCAGGTCCACCCCGACACCG---GGATCTCCTCCAA---GGCCATG 40415080 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 ||||||||||| || ||||||||||| | || ||||||| | |||||||| || Sbjct 40415079 AGCATCATGAACTCCTTCGTCAACGACATCTTTGAGCGCATCGCCTCCGAGGCCTCCCGT 40415020 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||| | || ||||||||| ||| ||| | | | |||||||||||||| |||||| Sbjct 40415019 CTGGCTCACTACAACAAGCGATCCACCATCACCTCCAGGGAGATCCAGACCGCTGTGCGC 40414960 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 || | ||| ||| || ||||||| ||||||||| |||||||| |||| Sbjct 40414959 CTCCTGCTGCCCGGTGAGCTGGCCAAGCACGCCGTGTCCGAGGGAACCA 40414911 Score = 167 bits (184), Expect = 3e-35 Identities = 175/229 (76%), Gaps = 6/229 (3%) Strand=Plus/Plus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| |||||||| |||||| |||| || |||||||| | ||||| Sbjct 60873572 TACAAGGTGCTGAAGCAGGTCCACCCCGACACCG---GGATCTCCTCCAA---GGCCATG 60873625 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 ||||||||||| || ||||||||||| | || ||||||| | |||||||| || Sbjct 60873626 AGCATCATGAACTCCTTCGTCAACGACATCTTTGAGCGCATCGCCTCCGAGGCCTCCCGT 60873685 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||| | || ||||||||| ||| ||| | | | |||||||||||||| |||||| Sbjct 60873686 CTGGCTCACTACAACAAGCGATCCACCATCACCTCCAGGGAGATCCAGACCGCTGTGCGC 60873745 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 || | ||| ||| || ||||||| ||||||||| |||||||| |||| Sbjct 60873746 CTCCTGCTGCCCGGTGAGCTGGCCAAGCACGCCGTGTCCGAGGGAACCA 60873794 Score = 167 bits (184), Expect = 3e-35 Identities = 175/229 (76%), Gaps = 6/229 (3%) Strand=Plus/Plus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| |||||||| || ||| |||| |||| ||| |||| ||||| Sbjct 70899662 TACAAGGTGCTGAAGCAGGTCCATCCCGACACCGG-----CATC-TCCTCCAAGGCCATG 70899715 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 ||||||||||| || ||||||||||| | || ||||||| | ||||||| || Sbjct 70899716 AGCATCATGAACTCCTTCGTCAACGACATCTTTGAGCGCATCGCCTCCGAGGCTTCCCGT 70899775 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||| | || |||||||||| ||| ||| || | | ||||||||||||||||||||| Sbjct 70899776 CTGGCTCACTACAACAAGCGCTCCACCATCAGCTCCAGGGAGATCCAGACCGCCGTGCGC 70899835 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 || | ||| ||| || ||||||| ||||||||| || ||||| |||| Sbjct 70899836 CTCCTGCTGCCCGGTGAGCTGGCCAAGCACGCCGTGTCTGAGGGAACCA 70899884 Score = 167 bits (184), Expect = 3e-35 Identities = 175/229 (76%), Gaps = 6/229 (3%) Strand=Plus/Minus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| |||||||| |||||| |||| || |||||||| | ||||| Sbjct 72149368 TACAAGGTGCTGAAGCAGGTCCACCCCGACACCG---GGATCTCCTCCAA---GGCCATG 72149315 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 ||||||||||| || ||||||||||| | || ||||||| | |||||||| || Sbjct 72149314 AGCATCATGAACTCCTTCGTCAACGACATCTTTGAGCGCATCGCCTCCGAGGCCTCCCGT 72149255 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||| | || ||||||||| ||| ||| | | | |||||||||||||| |||||| Sbjct 72149254 CTGGCTCACTACAACAAGCGATCCACCATCACCTCCAGGGAGATCCAGACCGCTGTGCGC 72149195 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 || | ||| ||| || ||||||| ||||||||| |||||||| |||| Sbjct 72149194 CTCCTGCTGCCCGGTGAGCTGGCCAAGCACGCCGTGTCCGAGGGAACCA 72149146 Score = 129 bits (142), Expect = 8e-24 Identities = 119/151 (79%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 724992 GTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGCCTGGCGCGCTCCAACAAG 725051 ||||||||||| | || ||||||| | |||||||| ||| ||||| | || ||||||| Sbjct 70224425 GTCAACGACATTTTTGAGCGCATCGCCTCCGAGGCCTCTCGTCTGGCTCACTACAACAAG 70224484 Query 725052 CGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGCCTGATCATGCGCGGCGAA 725111 ||| ||| ||| | | | |||||||||||||| ||||| || | ||| |||||| Sbjct 70224485 CGCTCCACCATCACCTCCAGGGAGATCCAGACCGCTGTGCGGCTCCTGCTGCCCGGCGAG 70224544 Query 725112 CTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||||||| ||||||||| || |||||||||| Sbjct 70224545 CTGGCCAAGCACGCCGTGTCTGAGGGCACCA 70224575 >seq25 Length=32766887 Score = 145 bits (160), Expect = 1e-28 Identities = 214/303 (71%), Gaps = 0/303 (0%) Strand=Plus/Minus Query 259883 ACCTACGAGGCCATGTCGCAGCAGTTGTTCACCTCAGCGACGCCCACGCTCTTTAATGCC 259942 |||||| | | ||||| || ||| ||||||| || | || || ||||| || ||| Sbjct 10521323 ACCTACAACCTCCTGTCGGAGAAGTGGTTCACCCACGCCTCTCCGACCCTCTTCAACGCC 10521264 Query 259943 GGCACGCCGCGCCCGCAGAATTCGTCGTGCTTTCTGTTGGACATGAAGGCCGATTCGATC 260002 || || || |||||| || ||||| ||| | | |||||||| ||| ||| Sbjct 10521263 GGGACCAACCGGCCGCAGCTGTCCAGTTGCTTCCTGCTCGCCATGAAGGACGACAGCATC 10521204 Query 260003 GAGGGCATCTATGACACGCTCAAGCAGTGCGCGCTCATCTCCAAGGCGGCCGGCGGCATC 260062 || |||||||| ||||| || ||||||||||||||||| |||||| | || ||||| ||| Sbjct 10521203 GAAGGCATCTACGACACCCTGAAGCAGTGCGCGCTCATTTCCAAGTCCGCTGGCGGGATC 10521144 Query 260063 GGTTTTGCCGCACACAAGGTGCGCGCCGCGGGCGCCTACGTGGCGGGCACCAACGGCCAG 260122 || | || | | | || | |||| |||| | || |||||||||||| | Sbjct 10521143 GGCGTGGCGGTGAGCTGCATCCGATCGACGGGAAGCTACATCGCAGGCACCAACGGCAAC 10521084 Query 260123 TCCAACGGCCTTGTGCCCATGCTTCGCGTTTTTAACGACACGGCGCGCTACGTCGACCAG 260182 |||||||| | ||||| ||||| | |||| ||| |||| || || ||||| |||||| Sbjct 10521083 TCCAACGGGTTGGTGCCGATGCTGAGAGTTTACAACAACACCGCTCGGTACGTTGACCAG 10521024 Query 260183 TGC 260185 || Sbjct 10521023 GGC 10521021 Score = 109 bits (120), Expect = 8e-18 Identities = 123/165 (75%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 262934 TGCTCGTGGCGCTCATGCCCACGGCCACGACGTCGCAGATCCTGGGCAACACCGAGGCGT 262993 |||| |||||| |||||||||||| | || | |||||||||||||||| |||| | Sbjct 10520098 TGCTGCTGGCGCCCATGCCCACGGCGTCCACCGCCCAGATCCTGGGCAACAACGAGTCCA 10520039 Query 262994 TCGAGGTCATCACGAGCAACATCTACACGCGCCGCGTGCTCTCGGGCGACTTTACCGTGG 263053 |||||| ||| |||||||||||||| ||| | ||||| || || || || | | Sbjct 10520038 TCGAGGCGTACACCAGCAACATCTACACCCGCAGGGTGCTGTCCGGAGAGTTCCAGATCG 10519979 Query 263054 TCAACCGCCACCTGGTCAAGCGCATGGTGGCGCGCGGCCTGTGGA 263098 |||||| ||||| ||||| || || |||||||||||||| Sbjct 10519978 TCAACCCTCACCTCCTCAAGGATCTGACGGAGCGCGGCCTGTGGA 10519934 Score = 102 bits (112), Expect = 1e-15 Identities = 104/133 (78%), Gaps = 2/133 (2%) Strand=Plus/Minus Query 262091 CAGATCTGGTCGGCCATTGTCGCGGCCCATATCGAGACCGGCACGCCCTACATGGTCTAC 262150 ||| |||||| ||||| ||| | |||| | ||| ||||| || ||||||||| ||||| Sbjct 10520726 CAGCTCTGGTACGCCATCATCGAGTCCCAGACCGAAACCGGGACCCCCTACATGCTCTAC 10520667 Query 262151 AAGGACGCCGTCAACCTGACCAGCAACCAGCAGAACCTGGGCACCACGACAGAG-GCCAA 262209 |||||||| |||| || ||||||||||||||||||||||||| | || | ||| Sbjct 10520666 AAGGACGCTTGCAACAGGAAGAGCAACCAGCAGAACCTGGGCACCATCA-AGTGCAGCAA 10520608 Query 262210 CCTGTGCACCGAG 262222 ||| ||||| ||| Sbjct 10520607 CCTCTGCACGGAG 10520595 >seq14 Length=29974747 Score = 116 bits (128), Expect = 5e-20 Identities = 130/174 (75%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 724969 CCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCG 725028 ||||| || |||||||| || || ||||| || |||| || |||| |||||| || Sbjct 17174898 CCATGAGTATAATGAACTCCTTCGTGAACGATCTGTTCGAGCGAATCGCCACCGAAGCGT 17174957 Query 725029 GTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCG 725088 |||||| || | | ||| |||||| ||| ||| || | ||| | |||||||||| Sbjct 17174958 CTCGCCTTGCTCAGTACAATAAGCGCGTCACCATCACCAGCAGGGAGGTGCAGACCGCCG 17175017 Query 725089 TGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 | | ||| | ||| ||| |||||||||| ||||||||| ||||||||||||| Sbjct 17175018 TCAGACTGCTGCTGCCCGGGGAACTGGCCAAGCACGCCGTGTCCGAGGGCACCA 17175071 >seq22 Length=23629796 Score = 95.1 bits (104), Expect = 2e-13 Identities = 97/127 (76%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 1455952 CGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCC 1456011 ||||| | | | ||||| || || | ||||| | | || ||||| |||||||||||| Sbjct 3940474 CGCTTCACGCAGGAGGTGCAGGTGACGGAGGCCAGGTGTTTCTACGGCTTCCAGATCGCC 3940533 Query 1456012 ATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCG 1456071 || || |||||||||||||| | ||| || ||||||||||||||| ||||||| || Sbjct 3940534 ATGGAGAACATCCACTCTGAGATGTACAGCCTGCTGATCGACACCTACATCAAGGATCCC 3940593 Query 1456072 GTCGAGA 1456078 ||||| Sbjct 3940594 AGCGAGA 3940600 Score = 86.0 bits (94), Expect = 9e-11 Identities = 88/114 (77%), Gaps = 1/114 (1%) Strand=Plus/Plus Query 1455716 GAGCCGCTGCTGCGCGATAACCCGAACCGCTTTGTCCTGTTCCCCATCCGCTACCAGCGG 1455775 ||||| |||||| || ||||| |||||| ||| | |||||||||| ||||| Sbjct 3939141 GAGCCTCTGCTGAAGGAAAACCCTCGCCGCTTCGTCATCTTCCCCATCCAGTACCACGAC 3939200 Query 1455776 ATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGT 1455829 || ||| | |||||| || ||||| ||||||||||| ||||| || |||||||| Sbjct 3939201 ATCTGGCAGATGTAC-AAGAAGGCAGAGGCCTCCTTCTGGACGGCAGAGGAGGT 3939253 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177808788704050