Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20hellerii_20[genbank_20GCA_5F001443345.1_202015-11-13] 25 sequences; 733,802,474 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq25 158 1e-33 seq16 114 1e-20 seq13 113 5e-20 >seq25 Length=32766887 Score = 158 bits (174), Expect = 1e-33 Identities = 907/1433 (63%), Gaps = 38/1433 (3%) Strand=Plus/Minus Query 7524 CTACTTGTTGAAAATCAACGGCGAATGCGCGGAACGAATTCAACACATGCTGTTGCGCGT 7583 |||| || |||| |||||||| || || || ||| || |||||||| || | || Sbjct 10521426 CTACCTGCTGAAGATCAACGGGAAAGTGGCCGAGCGACCGCAGCACATGCTCATGAGGGT 10521367 Query 7584 GGCGGTGGGCATTCACGGCGAAGACATTGACGCCGCCTTGGAAACGTACCAAATGATGTC 7643 | |||| || || ||||| |||||| ||||||||| | || || ||| | | |||| Sbjct 10521366 GTCGGTTGGGATCCACGGGCGAGACATCGACGCCGCCGTCGAGACCTACAACCTCCTGTC 10521307 Query 7644 TTTGAAACAGTTTACGCACGCTTCGCCCACCATGTTTGCCGCGGGCACAAACGCGCCTCA 7703 ||| ||| || ||||| || || ||| | || ||| || || ||| ||| || Sbjct 10521306 GGAGAAGTGGTTCACCCACGCCTCTCCGACCCTCTTCAACGCCGGGACCAACCGGCCGCA 10521247 Query 7704 ATTGTCCTCGTGTTTTTTGCTAACCATGCGCGAAGACAGCATCGACGGCATTTACAACAC 7763 ||||| || || |||| ||||| || ||||||||||| ||||| ||| |||| Sbjct 10521246 GCTGTCCAGTTGCTTCCTGCTCGCCATGAAGGACGACAGCATCGAAGGCATCTACGACAC 10521187 Query 7764 GCTGCGCGATTGCGCCAATATTTCCAAATACGGCGGCGGAATAGGTCTGAACGTAAACGA 7823 ||| | ||||| |||||||| | || ||||| || || || || | | Sbjct 10521186 CCTGAAGCAGTGCGCGCTCATTTCCAAGTCCGCTGGCGGGATCGGCGTGGCGGTGAGCTG 10521127 Query 7824 CGTGCGCGCCAACGGTAGCCGCATCGTGTCCACCAACGGAAAAGCCAGCGGTTTAGAGCC 7883 | | || | | || ||| ||||| ||||||||| || ||| ||| || | ||| Sbjct 10521126 CATCCGATCGACGGGAAGCTACATCGCAGGCACCAACGGCAACTCCAACGGGTTGGTGCC 10521067 Query 7884 CATGTTGCGCGTGTTCAATAACGCGGTGCGACATGTAGACCAGGGGGG---AAAGCGCAA 7940 ||| || | || | ||| ||| | | || | || |||||||| || ||| | Sbjct 10521066 GATGCTGAGAGTTTACAACAACACCGCTCGGTACGTTGACCAGGGCGGCAACAAGAGACC 10521007 Query 7941 AGGCGCCGCTGCCATCTATTTGGAGCCGTGGCACGCGGACATTTACGCAGTGCTAAATCT 8000 || ||| ||||| ||| ||||||| |||||| ||| | | || | || | || Sbjct 10521006 CGGGGCCTTCGCCATGTATCTGGAGCCATGGCACTTCGACGTGTTCGACTTCCTGGAGCT 10520947 Query 8001 GCGTCGCAACATGGGTTGCGAAGA-CAGCAAAGCGCGCGATCTATTCTTCGGATTGTGGG 8059 | |||| || || || ||| | ||| | || || |||| || |||||| Sbjct 10520946 GAAGAAGAACACAGGAAAGGAGGAGCAG-AGAGCCAGAGACCTTTTCTACGCCTTGTGGA 10520888 Query 8060 TGCCCGATCTGTTTATGAGGCGCGTTCATTTCGACGCACAATGGTCGCTCATGTGCCCCG 8119 | || || ||||| |||| | | || | | || | ||||| | ||||| ||| Sbjct 10520887 TCCCTGACCTGTTCATGAAGAGAGTGGAGAGCAACCAGGACTGGTCCTTGATGTGTCCC- 10520829 Query 8120 ATCG-TTGCCCTTTATTAAAAAACGTTTACGGTTCAAAATTTGAACAATTGTACAAACAA 8178 | || || ||| | | | | || | || || | | |||| || Sbjct 10520828 AGCGAGTGTCCTGGGCTGGACGAGTGCTGGGGAGAGGAGTTCGAGAAGCTCTACACCAAA 10520769 Query 8179 TACGAACACGACGGCGCGTACGTG---CGGCAAGTGAAAGCGCGCGACCTGCACCG---C 8232 || || | || || | ||| || ||||| |||| | | || | | | Sbjct 10520768 TATGAGAAGGAAGG---GAGAGTGAAAAGGGTGGTGAAGGCGC---AGCAGCTCTGGTAC 10520715 Query 8233 GCCATTATCGAATGTCAAAACGAAACCGGTATGCCGTACATGCTGTACAAAGACGCTTGC 8292 ||||| ||||| | || | ||||||||| | || |||||||| ||||| ||||||||| Sbjct 10520714 GCCATCATCGAGTCCCAGACCGAAACCGGGACCCCCTACATGCTCTACAAGGACGCTTGC 10520655 Query 8293 AACGCCAAAAGCAATCAAAGCAACGTGGGCACCATTTGTTGCAGCAATCTGTGCGCTGAA 8352 ||| || ||||| || ||| |||||||||| |||||||| || ||| | || Sbjct 10520654 AACAGGAAGAGCAACCAGCAGAACCTGGGCACCATCAAGTGCAGCAACCTCTGCACGGAG 10520595 Query 8353 ATTGTACAGTACAGCGCGCCCGACGAAGTGGCCGTTTGCAATCTAGCGTCGGTGTGTTTA 8412 | || |||||| | ||||| |||||||| ||||| || || || | | Sbjct 10520594 GTGGTGGAGTACACCAGCAAGGACGAGGTGGCCGTCTGCAACCTGGCCTCCATCGCCCTC 10520535 Query 8413 AACGCGTTCGTTGATCGACGCTCAAAC--ACTTACGACTTTGAACAATTGAAAAACGCCG 8470 ||| || ||| |||| | | |||| |||| || || || | | ||| Sbjct 10520534 AACATGTACGT-----CACGCCAGAGCGGACTTTCGAC-TTCAAGAA--GCTGGCCTCCG 10520483 Query 8471 T--GCAA-GTGACGGTACGCAATTTAGATCGCATCATTGATGTCAATTTTTATCCCTTGG 8527 | ||| || | || || | | ||||| || |||| | || || | Sbjct 10520482 TCACCAAGGTAATCGTGAAAAACCTCAACAAGATCATCGACATCAACTACTACCCGGTTC 10520423 Query 8528 AAGAAGCGCGCG-TATCGAACATGCGCCACAGACCCGTTGGCGTGGGCGTGCAAGGTCTG 8586 ||||| || | || |||| ||||||||| || | || | ||||| || |||||| Sbjct 10520422 CCGAAGC-CGAGACTTCCAACAAGCGCCACAGGCCGATCGGGATCGGCGTCCAGGGTCTG 10520364 Query 8587 GCCGACGCGTTTGCCATGTTGCGCCTCCCCTACGAAAGCCAAGAAGCGCGCATGCTCAAC 8646 |||||||| || | || |||| | ||| | |||||| | ||||| | |||||||| Sbjct 10520363 GCCGACGCCTTCATCCTGATGCGGCACCCTTTCGAAAGTCCCGAAGCTCAGCTGCTCAAC 10520304 Query 8647 ATAAAAATAGCGGAAACGGTGTATTACGGCGCATTAGAAGCCAGCTGTCAACTTGCCCGA 8706 || | || || || | || ||| ||| | || |||||||| | || ||| | Sbjct 10520303 ATCCAGATGTTCGAGACCATCTACCACGCCGCCCTGGAGGCCAGCTGCGAGCTCGCCGCA 10520244 Query 8707 GAATTGGGCACGTACGAATCGTACGCGGGCAGCCCTGCCAGCCGCGGAATATTGCAATAC 8766 || | ||| | ||||| |||||| |||| || | |||| || || | || ||| Sbjct 10520243 GAGCTCGGCCCCTACGAGACGTACGAGGGCTCGCCCGTCAGCAAGGGCATCCTCCAGTAC 10520184 Query 8767 GACATGTGGAATGTCACGCCCACC--TCTTTGTGGAATTGGAGCGATTTGAAACGCAAAA 8824 ||||||||| | ||||| ||| ||||| ||| | | ||| |||| || | Sbjct 10520183 GACATGTGGGAGAAGACGCCGACCGACCTTTG-GGACTGGAAGC-TGCTGAAGGAAAAGA 10520126 Query 8825 TTGCTCAATTCGGTTTGCGCAATTCGCTGTTGGTGGCTTACATGCCCACCGCCACGACTG 8884 | | || ||| || | || ||| || |||| ||||||||| || | || | Sbjct 10520125 TCGGCAAACACGGCGTGAGGAACAGCCTGCTGCTGGCGCCCATGCCCACGGCGTCCACCG 10520066 Query 8885 CTCAAATAATGGGAAACAACGAATCCTTTGAGCCGTTCACCAACAACGTGTAC 8937 | || || |||| |||||||| ||| | ||| ||| ||||| |||| | ||| Sbjct 10520065 CCCAGATCCTGGGCAACAACGAGTCCATCGAGGCGTACACCAGCAACATCTAC 10520013 >seq16 Length=24388307 Score = 114 bits (126), Expect = 1e-20 Identities = 164/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 134486 TCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCC 134545 |||||| || || || | ||| ||||| || ||||| ||||| || | ||||||||| Sbjct 2613273 TCCTCCCCTCAGGCGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGACGTTGTAGTCCGA 2613214 Query 134546 AACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGG 134605 | |||| | || || ||||||||||| ||||| |||| | |||||| || || || Sbjct 2613213 CAGGGTGCGGCCATCTTCCAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGG 2613154 Query 134606 TATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCAC 134665 ||||||||||| || ||||| ||| || || || | || || | ||||| Sbjct 2613153 AATGCCTTCTTTATCCTGAATCTTTGCCTTCACGTTCTCAATGGTATCACTGGGCTCCAC 2613094 Query 134666 GTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTT 134716 || || || ||||| || || || | ||||| |||||||| ||||| || Sbjct 2613093 CTCCAGGGTGATGGTCTTCCCAGTGAGGGTTTTCACGAAAATCTGCATCTT 2613043 >seq13 Length=27080333 Score = 113 bits (124), Expect = 5e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || || || || | || ||||| || |||||||| || || |||||||||||| Sbjct 11060520 CCACCCCTCAGACGGAGAACAAGGTGGAGGGTGGATTCTTTCTGGATGTTGTAGTCGGAC 11060579 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | |||| | || || ||||||||||| ||||| |||| | |||||| || || || Sbjct 11060580 AGGGTGCGGCCATCTTCCAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGG 11060639 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 ||||| || || || || || || ||||| || | |||||| | |||||| Sbjct 11060640 ATGCCCTCCTTATCCTGGATCTTGGCCTTGACGTTCTCAATGGTGTCGCTGGGTTCCACC 11060699 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || |||||||| ||||| | || || || || |||||||| Sbjct 11060700 TCCAGGGTGATGGTTTTGCCGGTGAGGGTCTTGACAAAGATTTGCAT 11060746 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505398242063000