Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20hellerii_20[genbank_20GCA_5F001443345.1_202015-11-13] 25 sequences; 733,802,474 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq25 378 1e-99 seq13 98.7 1e-15 seq20 87.8 2e-12 >seq25 Length=32766887 Score = 378 bits (418), Expect = 1e-99 Identities = 1263/1951 (65%), Gaps = 21/1951 (1%) Strand=Plus/Plus Query 68653 TTCTTGATCTCATCATTCCACAATTTTCTCTCCGTTAAAACTCTAAGGAGATGCGGATTA 68712 ||||| ||||| || ||||||| | |||||| | | | | ||||| || || || Sbjct 10519918 TTCTTCATCTCCTCGTTCCACAGGCCGCGCTCCGTCAGATCCTTGAGGAGGTGAGGGTTG 10519977 Query 68713 ACTATTTGAAATTCCCCAGATAACACTCTACGAGTGTAAATATTACTGGTATATGGTTCC 68772 || || || || || || || | ||| || || ||||| || || ||||| || | || Sbjct 10519978 ACGATCTGGAACTCTCCGGACAGCACCCTGCGGGTGTAGATGTTGCTGGTGTACGCCTCG 10520037 Query 68773 ACAGATTCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCACCAAT 68832 | || || || || ||||| || || || || || || || ||||| || |||| || Sbjct 10520038 ATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGACGCCGTGGGCATGGGCGCCAGCAGC 10520097 Query 68833 AAACTATTTCTAAGACCATGTGTTATGATTTTATCTTTTAGATGTTTCCAATCCCAAAGA 68892 | || || || | || ||| | ||| || || || || | ||||| |||||||| Sbjct 10520098 AGGCTGTTCCTCACGCCGTGTTTGCCGATCTTTTCCTTCAGCAGCTTCCAGTCCCAAAGG 10520157 Query 68893 TCAGATGGTACAACATTCCAAAGATCGTATTGTAGAATTCCGTTACTTGCATATGATCCA 68952 || | || | ||| | ||||| || || || || || || | || || Sbjct 10520158 TCGGTCGGCGTCTTCTCCCACATGTCGTACTGGAGGATGCCCTTGCTGACGGGCGAGCCC 10520217 Query 68953 TTATATGTTTCATAAGGTCCTTCCTGTTCAGCTAGTTCACAACTTGCCTCTAATGCACCG 69012 | || || || || || || || | | || || || || || ||||| | || || Sbjct 10520218 TCGTACGTCTCGTAGGGGCCGAGCTCTGCGGCGAGCTCGCAGCTGGCCTCCAGGGCGGCG 10520277 Query 69013 TAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGACTATCGAATGGA 69072 | || || || ||||| |||| | ||||| || ||||| |||| ||||| || Sbjct 10520278 TGGTAGATGGTCTCGAACATCTGGATGTTGAGCAGCTGAGCTTCGGGACTTTCGAAAGGG 10520337 Query 69073 TAATGTAAAAGAATAAATGCATCTGCCAATCCCTGAACCCCAATACCGATAGGTCTATGT 69132 | | | || || || || || |||| ||||| || || || ||||| || || || Sbjct 10520338 TGCCGCATCAGGATGAAGGCGTCGGCCAGACCCTGGACGCCGATCCCGATCGGCCTGTGG 10520397 Query 69133 CTCTTATTTGAACTTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTA 69192 | ||| || ||| | || ||||| |||| || || || || || || || || || || Sbjct 10520398 CGCTTGTTGGAAGTCTCGGCTTCGGGAACCGGGTAGTAGTTGATGTCGATGATCTTGTTG 10520457 Query 69193 AGATTTCGGACTACTACTTTAACCACGTCCTTTAGTTTGAGAAAATCAAATCGTCCA-TC 69251 || ||| || | ||| || ||| || || || || || |||| || Sbjct 10520458 AGGTTTTTCACGATTACCTTGGTGACGGAGGCCAGCTTCTTGAAGTCGAAA-GTCCGCTC 10520516 Query 69252 TA---TAACAAACATATTCAGTGCTACAGATGCTAGATTACAAACTGCTACCTCATTAGA 69308 | | || |||| || || || | || || || || || || || ||||| | Sbjct 10520517 TGGCGTGACGTACATGTTGAGGGCGATGGAGGCCAGGTTGCAGACGGCCACCTCGTCCTT 10520576 Query 69309 ATTTGCATATTGTATTATCTCTGTACATAGATTACTACATTTGATAGTCCCCAGATTTTG 69368 | | || | | | ||| || || || || || || ||||| || ||||| || || Sbjct 10520577 GCTGGTGTACTCCACCACCTCCGTGCAGAGGTTGCTGCACTTGATGGTGCCCAGGTTCTG 10520636 Query 69369 CTGATTACTCTTTTTGTTACAGGCGTCCTTGTAAAGAATAAACGGAGTACCAGTTTCAAT 69428 ||| || ||||| |||| || ||||||||||| || || | || || || ||||| | Sbjct 10520637 CTGGTTGCTCTTCCTGTTGCAAGCGTCCTTGTAGAGCATGTAGGGGGTCCCGGTTTCGGT 10520696 Query 69429 CTGAGATTCGATAATAGATTTCCAAACGACCCTAGCATTTATTACGGTCTTGTAACGCTT 69488 ||| || ||||| || | | ||| | | || || | || ||| | || || Sbjct 10520697 CTGGGACTCGATGATGGCGTACCAGAGCTGCTGCGCCTTCACCACC--CTTTTCACTCTC 10520754 Query 69489 C--TCTTTTTCATATTGTGTATATAGCCGTTCGAATTCATCTCCCCAAACATCATCCAAT 69546 | || || ||||||| || || ||| ||||| || |||||||| || |||| Sbjct 10520755 CCTTCCTTCTCATATTTGGTGTAGAGCTTCTCGAACTCCTCTCCCCAGCACTCGTCCAGC 10520814 Query 69547 CCAGGACATTCATTTGGACACATCAATGACCACACATCATCATCCTTAACTCGTTTCATA 69606 |||||||| || | ||||||||||| ||||| | | | || |||| ||||| Sbjct 10520815 CCAGGACACTCGCTGGGACACATCAAGGACCAGTCCTGGTTGCTCTCCACTCTCTTCATG 10520874 Query 69607 AATAGATCGGGAATCCAAAGAGC-TATAAAGAGATCTCTGGTTCTATTTTCTTCATTTCC 69665 || || || || ||||| | || || ||| || ||||||| ||| | || || ||||| Sbjct 10520875 AACAGGTCAGGGATCCACAAGGCGTAGAAA-AGGTCTCTGGCTCTCTGCTCCTCCTTTCC 10520933 Query 69666 TGTAttttttttAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATAT 69725 ||| || || || || || || || || | | || | |||||||| || ||||| || Sbjct 10520934 TGTGTTCTTCTTCAGCTCCAGGAAGTCGAACACGTCGAAGTGCCATGGCTCCAGATACAT 10520993 Query 69726 CGCCATGACTCCCGGTCGTTTATTTCCTCCCTGATCTATGTATCTGGCAGTGTTATTATA 69785 || | | | || |||| || || || ||||| || | ||| | || ||||| || || Sbjct 10520994 GGCGAAGGCCCCGGGTCTCTTGTTGCCGCCCTGGTCAACGTACCGAGCGGTGTTGTTGTA 10521053 Query 69786 GACTCTCAGCATCGGAATAATACCATTAGATTTACCATTTGTTCCAGAAATATAACTTCC 69845 |||||||||||||| | | || || || || || || || || | || || ||||| Sbjct 10521054 AACTCTCAGCATCGGCACCAACCCGTTGGAGTTGCCGTTGGTGCCTGCGATGTAGCTTCC 10521113 Query 69846 TCTTGCGCGAATATTACTAATAGATAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGC 69905 | | || || || | | | || || || || || || || || || || Sbjct 10521114 CGTCGATCGGATGCAGCTCACCGCCACGCCGATCCCGCCAGCGGACTTGGAAATGAGCGC 10521173 Query 69906 ACAACGTTTCAATGTGTCATATATACCCTCTATGCTATCATCTATCATGTTAAGAAGAAA 69965 || | |||| ||||| || || || || ||||| || || ||||| || || || Sbjct 10521174 GCACTGCTTCAGGGTGTCGTAGATGCCTTCGATGCTGTCGTCCTTCATGGCGAGCAGGAA 10521233 Query 69966 ACAGCTAGACATTTGATGATGTATAGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGT 70025 || || |||| || | | | || || || || || | || ||||| ||||| || Sbjct 10521234 GCAACTGGACAGCTGCGGCCGGTTGGTCCCGGCGTTGAAGAGGGTCGGAGAGGCGTGGGT 10521293 Query 70026 GAACCATTTTTCAGAAAGCAGATTGTATGTTTCAATAGCTGATTCTATATCCCACTGATG 70085 |||||| || || || || || ||||| || || | || | || || || | | || Sbjct 10521294 GAACCACTTCTCCGACAGGAGGTTGTAGGTCTCGACGGCGGCGTCGATGTCTCGCCCGTG 10521353 Query 70086 AATTCCTATCGCGACACGCATCAACATATGCTGAGGTCGTTCTACCGTTTTATTATTTAT 70145 || || | || || | ||| | ||| ||||| ||||| || || ||| || || Sbjct 10521354 GATCCCAACCGACACCCTCATGAGCATGTGCTGCGGTCGCTCGGCCACTTTCCCGTTGAT 10521413 Query 70146 TTTCAACAGGTATGATTTTTCCAGAGTTTTAAACCCAAAATAGTTGTATGAAAAGTCTCT 70205 |||| |||||| || |||||||| || || || || ||||||| || || ||||| Sbjct 10521414 CTTCAGCAGGTAGGAACGCTCCAGAGTCTTGAAGCCGAAGAAGTTGTAGGAGAAATCTCT 10521473 Query 70206 TTCGTAAATAATAACAGAATTTAGTTTATCCTTATATTTGGTAACTATATCCA-TAACAG 70264 |||||||| || || || || ||||| | || | || || || | | | Sbjct 10521474 GTCGTAAATGATGGAGGAGTTGAGGCGGTCCTTGTTTTCCATGACGATGTCGAGCGTCTG 10521533 Query 70265 TAGGTGAGATAATCGGAGA---TCGTTTACCATTTTTAGGATTAACATAGTTGAATAAAT 70321 | ||||| || ||||| ||||| || ||| || |||||| ||| | | Sbjct 10521534 CTTG-GAGATCATGGGAGAGTGGCGTTT---GTTCAGAGGGTTGACATAGGCGAACAGGT 10521589 Query 70322 CTTCCATTACATCACTAAATAGtttttttGTTTCCTTGTGTAAATTTGATATGGCTATTC 70381 | ||||| || || || || | || || || ||||| || | || || | ||| || | Sbjct 10521590 CCTCCATCACCTCGCTGAACACCTTCTTGGTCTCCTTATGCAGGTTGGAGACGGCAATCC 10521649 Query 70382 TGGCTGCTAGAATAGCATAGTCAGGATGTTGTGTAGTACAAGTAGCTGCTATTTCCGCAG 70441 | || || || || || ||||| || |||| || || || || || || ||||| | Sbjct 10521650 TCGCGGCCAGGATGGCGTAGTCGGGGTGTTTGGTCGTCAGGGTGGCCGCGATCTCCGCTG 10521709 Query 70442 CTAACGTATCTAATTCTATAGTTGTAACTCCGTTATATAGCCCTTGAATAACTTTCATGG 70501 ||| ||| |||| || | || || || ||| | || | || || || || ||||||| Sbjct 10521710 CTAGCGTGTCTAGCTCCACGGTGGTGACGCCGCTGTACAAGCCCTGTATCACCTTCATGG 10521769 Query 70502 CTATTTTGATAGGATCTATGAATTCTGTGTTCAGACCATAACATAATTTTCT-AATACGA 70560 || | ||||| | || || | |||||| || || || || |||| || || Sbjct 10521770 TGATCTGAGCCGGATCCACAAAGTCCGGGTTCAGGCCGTAGCA-AAGCTTCTGGATGCGG 10521828 Query 70561 GATGTAATTTTATCAAACATAACATTCTCCT 70591 || || |||||||||||||| || ||||| Sbjct 10521829 GAGGTGATTTTATCAAACATGACGCGCTCCT 10521859 Score = 89.7 bits (98), Expect = 7e-13 Identities = 121/169 (72%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 68441 TCCATCCGTAGAAATGCATACTTGTTAGTTTGGAATAACTTGGATCGGCTATATGAATAT 68500 |||| ||| |||| ||||| || || ||||| || |||| || || || || || | Sbjct 10519625 TCCAGCCGAAGAAGTGCATGCTGGTCAGTTTTCCGTAGTTTGGCTCAGCGATGTGGATGT 10519684 Query 68501 TCATCGATTGACTTTGATCGATGAAAGCTCCTCTATCTGCCGCCATTTTTATAATACTCT 68560 ||| ||| || || || |||||||| ||||| | ||||||||||| || | | ||| Sbjct 10519685 TCAGCGACTGGCTCTGGTCGATGAAGGCTCCACGGTCTGCCGCCATCTTCAGCACGGTCT 10519744 Query 68561 TTTGAGGAATTTCCCAAATAGTCTTAAAAATCTGTTTGATATCATCTGG 68609 | || | |||||||||| || ||| | | ||| || | |||||||| Sbjct 10519745 TCTGGGAGATTTCCCAAACGGTTTTATACAGCTGCTTCAGGTCATCTGG 10519793 >seq13 Length=27080333 Score = 98.7 bits (108), Expect = 1e-15 Identities = 93/119 (78%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 69325 ATCTCTGTACATAGATTACTACATTTGATAGTCCCCAGATTTTGCTGATTACTCTTTTTG 69384 |||||||| || ||||| || | ||||| || |||||||||||||| || |||| || Sbjct 15278744 ATCTCTGTGCAGAGATTGCTGGACTTGATGGTGCCCAGATTTTGCTGGTTGGTCTTCCTG 15278803 Query 69385 TTACAGGCGTCCTTGTAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCGATAAT 69443 || |||||||||||||| || || |||| ||||| || || |||| || ||||| || Sbjct 15278804 TTGCAGGCGTCCTTGTAGAGCATGTACGGCGTACCCGTCTCTGTCTGCGACTCGATGAT 15278862 Score = 96.9 bits (106), Expect = 5e-15 Identities = 101/133 (76%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 69991 GTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTG 70050 || || || || || | |||||||| || ||||||||||| || || |||||||| ||| Sbjct 15280492 GTGCCAGCGTTGAACAGGGTAGGAGAGGCATGAGTGAACCACTTCTCTGAAAGCAGGTTG 15280551 Query 70051 TATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAAC 70110 |||||||||| ||||| || || || | | |||||| || | || || | ||||| | Sbjct 15280552 TATGTTTCAACAGCTGCCTCAATGTCTCCTTTATGAATCCCGACTGCCACTCTCATCAGC 15280611 Query 70111 ATATGCTGAGGTC 70123 || ||||| |||| Sbjct 15280612 ATGTGCTGGGGTC 15280624 >seq20 Length=26302745 Score = 87.8 bits (96), Expect = 2e-12 Identities = 101/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698 ||||||| || ||||| | |||||| || | || || || ||||| || || | ||| | Sbjct 12394070 CCTCATCCCTGCTAATGAGTTCGTTGGAGTAGGTAAGGCCTGGCATGAGGCCTCTCTTCT 12394129 Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758 | ||||| | || ||||| || || || || ||||| || || || ||||||||||| | Sbjct 12394130 TCAGCCAGTAGATAGCAGCGAATGAGCCTGAGAAGAAAATCCCCTCCACTGCTGCAAAAG 12394189 Query 39759 CAACAAGTCTCTCTCC 39774 | ||||| | ||| || Sbjct 12394190 CCACAAGACGCTCCCC 12394205 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686908585341000