Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20hellerii_20[genbank_20GCA_5F001443345.1_202015-11-13] 25 sequences; 733,802,474 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq6 100 2e-16 seq22 82.4 6e-11 >seq6 Length=22489619 Score = 100 bits (110), Expect = 2e-16 Identities = 99/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 41076 TGTCAGTTTTACGTTTGCAATGGTGAACTGTCATGTCAATTGTATCAAAGATCAGGTGAC 41135 |||||||| ||||| ||| | || || ||||| ||||| |||| || | || | ||| Sbjct 14545726 TGTCAGTTCTACGTCTGCGACGGGGAGCTGTCCTGTCAGCTGTACCAGCGCTCCGCCGAC 14545785 Query 41136 ATGGGACTAGGGGTCCCGTTTAACATAGCGAGTTATGCTCTGCTCACGTATATGATTGCA 41195 ||||| || ||||| || || ||||| || || ||||| || ||||| || ||||||||| Sbjct 14545786 ATGGGTCTGGGGGTGCCTTTCAACATCGCCAGCTATGCACTTCTCACCTACATGATTGCA 14545845 Query 41196 CACGTTAC 41203 ||| |||| Sbjct 14545846 CACATTAC 14545853 >seq22 Length=23629796 Score = 82.4 bits (90), Expect = 6e-11 Identities = 96/127 (76%), Gaps = 2/127 (2%) Strand=Plus/Minus Query 77311 CCAGACAACCTCCAGCTCCAAATTGAGTTGGTCCAGCTTCATAAAGTCATCCTTGTTGAC 77370 |||||| || | |||||| | || || ||||||||| ||||||||| || |||||| Sbjct 5001572 CCAGACCACGTTCAGCTCAGAGTTCAGCCGGTCCAGCTCCATAAAGTCTTCTTTGTTGGT 5001513 Query 77371 AA-CTGACCCTCCGCCATGCAGCCTCCAGCCGTTCTGCTTCCAGTTCTTAACCCACTTAG 77429 | | |||| | | | | || ||||||||||||| | |||||| |||| ||||| | | Sbjct 5001512 GATCGGACCGCCAGACTT-CAACCTCCAGCCGTTCAGTTTCCAGGTCTTCACCCAGGTGG 5001454 Query 77430 TCACACC 77436 ||||||| Sbjct 5001453 TCACACC 5001447 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397455878900125