Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20hellerii_20[genbank_20GCA_5F001443345.1_202015-11-13] 25 sequences; 733,802,474 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq25 149 8e-31 seq13 100 4e-16 seq22 89.7 6e-13 seq20 87.8 2e-12 >seq25 Length=32766887 Score = 149 bits (164), Expect = 8e-31 Identities = 952/1501 (63%), Gaps = 62/1501 (4%) Strand=Plus/Plus Query 110614 CTTCATATCCTTGGACCAGAGACCAATCTTCTTGAGGTCATTGACGAGGTGCTTGTTGAC 110673 |||||| |||| | ||| || || || | | || || |||| |||||| |||||| Sbjct 10519920 CTTCATCTCCTCGTTCCACAGGCCGCGCTCCGTCAGATCCTTGAGGAGGTGAGGGTTGAC 10519979 Query 110674 AATGACAAACTCACCTGCGAGGGTTCTTCTCAGGTAGATGTTTGTTGTGTATGGTTCAAA 110733 || ||||| || | || || | ||||||||| | ||||| | || | Sbjct 10519980 GATCTGGAACTCTCCGGACAGCACCCTGCGGGTGTAGATGTTGCTGGTGTACGCCTCGAT 10520039 Query 110734 GCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGTGCCATCAAAAG 110793 | | || || || |||| ||| || |||||||| || || ||||| || |||| || || Sbjct 10520040 GGACTCGTTGTTGCCCAGGATCTGGGCGGTGGACGCCGTGGGCATGGGCGCCAGCAGCAG 10520099 Query 110794 ACTGTTACGAAGACCCTTCTCCTTGATGCGTTCCTTGAGAACATCCCAGTCGTAGTTGA- 110852 ||||| | | || | | ||| |||||| || | | |||||| | | Sbjct 10520100 GCTGTTCCTCACGCCGTGTTTGCCGATCTTTTCCTTCAGCAGCTTCCAGTCCCAAAGGTC 10520159 Query 110853 GCTTGGTTTCACCTTCCCACATGTCAAACTGAAGCAC-CCCTTGG-GACGCGGGAGAACC 110910 | | || || || |||||||||| |||| || | |||||| |||| | ||| || Sbjct 10520160 GGTCGGCGTCTTCT-CCCACATGTCGTACTGGAGGATGCCCTTGCTGACGGGCGAG--CC 10520216 Query 110911 CTCAAAGGTTTCATAGGAACCTTGGGCTTCAGCCAATTCACAGCTCGCCTCCAGGGATGC 110970 ||| | || || |||| || | || | || | || ||||| |||||||||| || Sbjct 10520217 CTCGTACGTCTCGTAGGGGCCGAGCTCTGCGGCGAGCTCGCAGCTGGCCTCCAGGGCGGC 10520276 Query 110971 GTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTCATCTGAATCAAATGC 111030 ||| || ||||| || || || | || | | || ||||| || || | Sbjct 10520277 GTGGTAGATGGTCTCGAACATCTGGATGTTGAGCAGCTGAGCTTCGGGACTTTCGAAAGG 10520336 Query 111031 GTAGCGGCA-CAAAATAAATACATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGT 111089 || || ||| || || || | || || ||||| || || || | || || || |||| Sbjct 10520337 GT-GCCGCATCAGGATGAAGGCGTCGGCCAGACCCTGGACGCCGATCCCGATCGGCCTGT 10520395 Query 111090 GTCGCATATTAGACTTTCGCGCAGTCTC-AACGGGATAAAAATTTCTGTCAATGACTCGG 111148 | ||| | || || | | || || ||| || || | || |||| |||| | Sbjct 10520396 GGCGCTTGTTGGAAGT-CTCGGCTTCGGGAACCGGGTAGTAGTTGATGTCGATGATCTTG 10520454 Query 111149 TTTAGATTTTTGGTAACAATCTTTGTGATTTCATGAAGTTTTTCATAATCAAAAGTGCGA 111208 || || ||||| | | ||| |||| || || | | || ||||| || Sbjct 10520455 TTGAGGTTTTTCACGATTACCTTGGTGACGGAGGCCAGCTTCTTGAAGTCGAAAGTCCG- 10520513 Query 111209 GTCTCTTCATTGACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCA 111268 |||| |||| ||| | |||||||| || |||| ||||| || ||| ||| Sbjct 10520514 --CTCTGGCGTGACGTACATGTTGAGGGCGATGGAGGCCAGGTTGCAGACGGCCACCTCG 10520571 Query 111269 TCCTTATCTGTGTACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAA 111328 ||||| |||||||| | | || || || | |||| | ||| || || |||| Sbjct 10520572 TCCTTGCTGGTGTACTCCACCACCTCCGTGCAGAGGTTGCTGCACTTGATGGTGCCCAGG 10520631 Query 111329 TTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTC 111388 |||| ||||| |||||| ||||||| || |||||||||||||||||||| ||||| || Sbjct 10520632 TTCTGCTGGTTGCTCTTCCTGTTGCAAGCGTCCTTGTAGAGCATGTAGGGGGTCCCGGTT 10520691 Query 111389 TCCGTCTGTGATTTGAGAATAGCCTTCCA-AACATCGGCGGCTGGTACAATGGCGTTGGC 111447 || ||||| || | || || || | ||| | | | ||| || || | || | Sbjct 10520692 TCGGTCTGGGACTCGATGATGGCGTACCAGAGCTGCTGCGCCT-TCACCACCCTTTTCAC 10520750 Query 111448 CCGTCCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGC-GTCGG 111506 | || ||| ||| || || |||||||| || |||||||| ||| | || ||| Sbjct 10520751 TCTCCCTTCCTTCTCATATTTGGTGTAGAGCTTCTCGAACTCCTCTCCC-CAGCACTCGT 10520809 Query 111507 AGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCTT--CCTCAACCCG 111564 || || || || | ||||| | | ||||| | || || ||| || | Sbjct 10520810 CCAGCCCAGGACACTCGCTGGGACACATCAAGGACCA--GTCCTGGTTGCTCTCCACTCT 10520867 Query 111565 CTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTC 111624 ||||||||| ||||| || ||||||| || | || || ||||| | ||| || Sbjct 10520868 CTTCATGAACAGGTCAGGGATCCACAAGGCGTAGAAAAGGTCTCTGGCTCTCTGCTCCTC 10520927 Query 111625 GTCACCTTGGTTGAGTCGT-AACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAA 111683 | ||| ||| || | | ||| ||||| || | | || |||||||||||| | Sbjct 10520928 CTTTCCTGTGTT-CTTCTTCAGCTCCAGGAAGTCGAACACGTCGAAGTGCCATGGCTCCA 10520986 Query 111684 GATAGACTGCGA------TAGATCCCTT-TCGACGCCCAGCTTGATTTACATAGCGCGCT 111736 |||| | |||| | || ||| | | ||||| || | || || || || Sbjct 10520987 GATACATGGCGAAGGCCCCGGGTCTCTTGTTGCCGCCC----TGGTCAACGTACCGAGCG 10521042 Query 111737 GTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGACCATTTGTCCCCCGA 111796 ||| ||| | || | ||||| || | | || | || | || || || || Sbjct 10521043 GTGTTGTTGTAAACTCTCAGCATCGGCACCAACCCGTTGGAGTTGCCGTTGGTGCC---- 10521098 Query 111797 ATACGAGATTTATTGGCTCTCACATC-AT-GGATG---------TGCATCCCAATACCCC 111845 | ||| || ||| || | || || ||||| || || || || | Sbjct 10521099 ---TGCGATGTA---GCT-TCCCGTCGATCGGATGCAGCTCACCGCCACGCCGATCCCGC 10521151 Query 111846 CAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGT 111905 |||| |||| || || |||| |||| | | || || | ||||| || | ||| || Sbjct 10521152 CAGCGGACTTGGAAATGAGCGCGCACTGCTTCAGGGTGTCGTAGATGCCTTCGATGCTGT 10521211 Query 111906 CCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTC--TTGGTGTACCAGCATT 111963 | ||||| |||||| |||||||||||||||| |||||| | ||| || || || || Sbjct 10521212 CGTCCTTCATGGCGAGCAGGAAGCAACTGGACAGCTGCGGCCGGTTG--GTCCCGGCGTT 10521269 Query 111964 GAAGAGGGTTGGTGTTGCGTGAATGAACATACCT-TGGGACATCTTGTCGTATGTCTCCA 112022 ||||||||| || | ||||| ||||| || | | |||| || ||| ||||| | Sbjct 10521270 GAAGAGGGTCGGAGAGGCGTGGGTGAAC-CACTTCTCCGACAGGAGGTTGTAGGTCTCGA 10521328 Query 112023 AGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCGACCCGCATGAACATGTACTGTG 112082 | | | || |||||| ||||||||| || | | |||| ||||| ||||| ||| | Sbjct 10521329 CGGCGGCGTCGATGTCTCGCCCGTGGATCCCAACCGACACCCTCATGAGCATGTGCTGCG 10521388 Query 112083 G 112083 | Sbjct 10521389 G 10521389 >seq13 Length=27080333 Score = 100 bits (110), Expect = 4e-16 Identities = 114/153 (75%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 111265 CTCATCCTTATCTGTGTACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAATCGTCCC 111324 |||||| ||| |||||| || | ||| ||||| || | ||| ||| || || || Sbjct 15278719 CTCATCTTTACTTGTGTATTCAACAATCTCTGTGCAGAGATTGCTGGACTTGATGGTGCC 15278778 Query 111325 CAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCC 111384 || ||| | ||||| ||||| ||||||| || ||||||||||||||||| ||||| || Sbjct 15278779 CAGATTTTGCTGGTTGGTCTTCCTGTTGCAGGCGTCCTTGTAGAGCATGTACGGCGTACC 15278838 Query 111385 CGTCTCCGTCTGTGATTTGAGAATAGCCTTCCA 111417 |||||| ||||| || | || || || | ||| Sbjct 15278839 CGTCTCTGTCTGCGACTCGATGATGGCGTACCA 15278871 Score = 82.4 bits (90), Expect = 1e-10 Identities = 74/93 (80%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 110707 GTAGATGTTTGTTGTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGA 110766 ||||||||| ||||||||| |||| | | || || ||||||||||| || || ||||| Sbjct 15277132 GTAGATGTTGCTTGTGTATGCCTCAATGGACTCGTTGTTACCCAAGATCTGGGCAGTGGA 15277191 Query 110767 GGCTGTTGGCATTGGTGCCATCAAAAGACTGTT 110799 ||||| |||||||| |||| | |||||||| Sbjct 15277192 AGCTGTGGGCATTGGGGCCAAAAGCAGACTGTT 15277224 >seq22 Length=23629796 Score = 89.7 bits (98), Expect = 6e-13 Identities = 67/79 (85%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 122371 TAGTCCCCGACCCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 122430 || ||||||||||||||||||||||||||||||||||| || || |||||| ||||| Sbjct 3941811 TACTCCCCGACCCGCTTCTCAAAGAAGTTGGTCTTCCCCTCCAGAGAAATGTTCTCCATG 3941752 Query 122431 AAGTCAAATGGATTCTTCG 122449 ||||| || || |||| || Sbjct 3941751 AAGTCGAACGGGTTCTCCG 3941733 Score = 89.7 bits (98), Expect = 6e-13 Identities = 67/79 (85%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 122371 TAGTCCCCGACCCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 122430 || ||||||||||||||||||||||||||||||||||| || || |||||| ||||| Sbjct 3948770 TACTCCCCGACCCGCTTCTCAAAGAAGTTGGTCTTCCCCTCCAGAGAAATGTTCTCCATG 3948829 Query 122431 AAGTCAAATGGATTCTTCG 122449 ||||| || || |||| || Sbjct 3948830 AAGTCGAACGGGTTCTCCG 3948848 >seq20 Length=26302745 Score = 87.8 bits (96), Expect = 2e-12 Identities = 99/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 122678 CCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACCCCGCTTCT 122737 ||||||| | | ||| ||||| || ||| || || ||||||||||| || | ||||| Sbjct 12394070 CCTCATCCCTGCTAATGAGTTCGTTGGAGTAGGTAAGGCCTGGCATGAGGCCTCTCTTCT 12394129 Query 122738 TCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACACGCAAACG 122797 ||| ||| || ||||| |||||| || |||||||| || |||||||| ||||| | Sbjct 12394130 TCAGCCAGTAGATAGCAGCGAATGAGCCTGAGAAGAAAATCCCCTCCACTGCTGCAAAAG 12394189 Query 122798 CAAAAAGGCGTTC 122810 | | ||| || || Sbjct 12394190 CCACAAGACGCTC 12394202 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628031803740000