Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20hellerii_20[genbank_20GCA_5F001443345.1_202015-11-13] 25 sequences; 733,802,474 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq25 159 4e-34 seq13 95.1 1e-14 seq18 91.5 2e-13 seq20 89.7 6e-13 >seq25 Length=32766887 Score = 159 bits (176), Expect = 4e-34 Identities = 892/1400 (64%), Gaps = 46/1400 (3%) Strand=Plus/Plus Query 118182 TAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAG 118241 ||||| ||| | ||||| | ||| | | |||| ||||| |||| ||| ||||| ||||| Sbjct 10520014 TAGATGTTGCTGGTGTACGCCTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAC 10520073 Query 118242 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCC 118301 || ||||||||||| |||| || |||||||| | | || | || | || |||| Sbjct 10520074 GCCGTGGGCATGGGCGCCAGCAGCAGGCTGTTCCTCACGCCGTGTTTGCCGATCTTTTCC 10520133 Query 118302 TTGAG-AGCGTCCCAGTCGTA---GTTGAGCTTTGTCTCCCCCTGCCACATATCAAACTG 118357 || || ||| ||| |||| | || | | |||| | || ||||| || |||| Sbjct 10520134 TTCAGCAGCTTCC-AGTCCCAAAGGTCGGTCGGCGTCTTCTCC---CACATGTCGTACTG 10520189 Query 118358 GAGGATACCTTGG--GACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCC 118415 |||||| || | | |||| ||||| ||||| | ||||| || ||||| | | Sbjct 10520190 GAGGATGCCCTTGCTGACG--GGCGAGCCCTCGTACGTCTCGTAGGGGCCGAGCTCTGCG 10520247 Query 118416 GCCAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTTTCAAAAATGCGAGCATTC 118475 || | ||| |||| ||||| ||||| ||||| || || || || || || | || Sbjct 10520248 GCGAGCTCGCAGCTGGCCTCCAGGGCGGCGTGGTAGATGGTCTCGAACATCTGGATGTTG 10520307 Query 118476 ATTGCCTTGGCCTCGTCGGAAT--CAAACGCGAGTCGGCACAAAATAAATACATCCGCGA 118533 | || || ||| ||| | | || | | | || || || || | || || | Sbjct 10520308 AGCAGCTGAGCTTCG--GGACTTTCGAAAGGGTGCCGCATCAGGATGAAGGCGTCGGCCA 10520365 Query 118534 GACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTCCGAGCGGTCTCC- 118592 |||| ||||| |||| || || || | || | | | || || || ||| || Sbjct 10520366 GACCCTGGACGCCGATCCCGATCGGCCTGTGGCGCTTGTTGGAAGTCT---CGGCTTCGG 10520422 Query 118593 --ACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGA 118650 || || || | || | ||||| | | | || || ||||| || ||||| |||| Sbjct 10520423 GAACCGGGTAGTAGTTGATGTCGATGATCTTGTTGAGGTTTTTCACGATTACCTTGGTGA 10520482 Query 118651 TTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGG 118710 ||||| | | | || ||| | || |||| |||| ||| | |||| Sbjct 10520483 CGGAGGCCAGCTTCTTGAAGTCGAAAGTCCG---CTCTGGCGTGACGTACATGTTGAGGG 10520539 Query 118711 CGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCG 118770 |||| || ||||| || || || | ||| ||||| |||||||| | | |||| Sbjct 10520540 CGATGGAGGCCAGGTTGCAGACGGCCACCTCGTCCTTGCTGGTGTACTCCACCACCTCCG 10520599 Query 118771 TGCACAAGTTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACG 118830 |||| | ||| | ||| |||||||||| ||||| || || ||| |||| || | Sbjct 10520600 TGCAGAGGTTGCTGCACTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTCCTGTTGCAAG 10520659 Query 118831 CATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCC 118890 | |||||||| |||||||| || ||||| || || || ||||||| || || || | || Sbjct 10520660 CGTCCTTGTAGAGCATGTAGGGGGTCCCGGTTTCGGTCTGGGACTCGATGATGGCGTACC 10520719 Query 118891 AGACAT-CGGCAGCTGGCACAGTGGCGTTGGCTCGCCCCTCTTCCTCGTACTTTGTGTAG 118949 ||| | | || || ||| || ||| ||| || | ||| || || |||||| Sbjct 10520720 AGAGCTGCTGCGCCTT-CACCACCCTTTTCACTCTCCCTTCCTTCTCATATTTGGTGTAG 10520778 Query 118950 AGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGG-CAGAA 119008 || || ||||| || ||| | ||| ||||| || || ||||| || | Sbjct 10520779 AGCTTCTCGAACTCCTCTCCCCAGCACTCGTCCAGCCCAGGACACTCG-CTGGGACACAT 10520837 Query 119009 GAGAGACCATTGACCACCCTCCTCA--ACCCGCTTCATGAAGAGGTCTGGGATCCAGAGC 119066 | ||||| | || | ||| || | ||||||||| ||||| |||||||| | Sbjct 10520838 CAAGGACCAGT--CCTGGTTGCTCTCCACTCTCTTCATGAACAGGTCAGGGATCCACAAG 10520895 Query 119067 GCCGAGAAGAGATCCC-GACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAA 119125 || |||| || || | | | ||| || | | || || || || ||||| Sbjct 10520896 GCGTAGAAAAGGTCTCTGGCTCTCTGCTCCTCCTTTCCTGTG-TTCTTCTTCAGCTCCAG 10520954 Query 119126 AAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCC----CTTAC 119181 ||||| | | || |||||| || ||||| |||| |||| | ||| || Sbjct 10520955 GAAGTCGAACACGTCGAAGTGCCATGGCTCCAGATACATGGCGAAGGCCCCGGGTCTCTT 10521014 Query 119182 GACGACCAGCCTGGTTTACATACCTCGCAGTGGCGTTAAATACACGAAGCATTGGAATGA 119241 | | || |||||| || |||| || ||| ||| | || | ||||| || | | Sbjct 10521015 GTTG-CCGCCCTGGTCAACGTACCGAGCGGTGTTGTTGTAAACTCTCAGCATCGGCACCA 10521073 Query 119242 TACCATCGGATTGGCCATTTGTCCCCCGAATACGAGACTTATTGGC--TCTGACATCGTG 119299 || | ||| | ||| || || || || || ||| | | || || | Sbjct 10521074 ACCCGTTGGAGTTGCCGTTGGTGCCTGCGATGT-AG-CTTCCCGTCGATCGGATGCAGCT 10521131 Query 119300 GATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCC 119359 | || || || || || || |||| || || ||||||||| | | || || | Sbjct 10521132 CACCGCCACGCCGATCCCGCCAGCGGACTTGGAAATGAGCGCGCACTGCTTCAGGGTGTC 10521191 Query 119360 GTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGAGG 119419 |||||| || ||||| ||| |||| | |||| |||||||| || |||| || || Sbjct 10521192 GTAGATGCCTTCGATGCTGTCGTCCTTCATGGCGAGCAGGAAGCAACTGGACAGCTGCGG 10521251 Query 119420 CCTGGGTGTACCAGCGTTGAAGAGAGTTGGTGTCGCGTGGATGAACATACCT-TGGGACA 119478 || | || || ||||||||||| || || | |||||| ||||| || | | |||| Sbjct 10521252 CCGGTTGGTCCCGGCGTTGAAGAGGGTCGGAGAGGCGTGGGTGAAC-CACTTCTCCGACA 10521310 Query 119479 TCTTGTCGTAGGTCTCCAAGACGGCGGGAATGTCTTCCCCGTGAATACCGATCGAGACCC 119538 || ||||||||| | | ||||| |||||| |||||| || || | ||| |||| Sbjct 10521311 GGAGGTTGTAGGTCTCGACGGCGGCGTCGATGTCTCGCCCGTGGATCCCAACCGACACCC 10521370 Query 119539 GCATAAACATGTATTGGGGT 119558 ||| | ||||| || ||| Sbjct 10521371 TCATGAGCATGTGCTGCGGT 10521390 >seq13 Length=27080333 Score = 95.1 bits (104), Expect = 1e-14 Identities = 76/92 (83%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 118182 TAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAG 118241 ||||| ||| | ||||||| ||||| | |||| |||||||||||||| ||||| ||||| Sbjct 15277133 TAGATGTTGCTTGTGTATGCCTCAATGGACTCGTTGTTACCCAAGATCTGGGCAGTGGAA 15277192 Query 118242 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTT 118273 ||||||||||| || |||| || || ||||| Sbjct 15277193 GCTGTGGGCATTGGGGCCAAAAGCAGACTGTT 15277224 >seq18 Length=80077792 Score = 91.5 bits (100), Expect = 2e-13 Identities = 147/206 (71%), Gaps = 4/206 (2%) Strand=Plus/Plus Query 14065 ATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCCGC 14124 |||||| || ||||| ||||| || || || || | ||| ||||||||||| || Sbjct 51266047 ATCAAAACGTCCTGGACGGAGAAGAGCTGGATCTAGAACATCTGAACGGTTCGTCGCAGC 51266106 Query 14125 GATGACAACGATGCCCGTCTCGTTA-TCAAAGCCATCCATCTCAGTCAAGAGTTGATTGA 14183 ||| || | ||| ||| || | ||||| |||||||| ||| |||||||||| || | Sbjct 51266107 GATAACGATGAT-CCCTTCATTTCCCTCAAAACCATCCATTTCAATCAAGAGTTGGTTCA 51266165 Query 14184 TGGTTTGTTCGCGTTCATCATTCGCAGG-CATACCACCCGCACTGCGTTGCTTACCGACG 14242 ||||||||| ||||||||||| | | || || ||| ||||| ||| || Sbjct 51266166 AGGTTTGTTCACGTTCATCATTTCCTCCACCTAGG-CCAACACCACGTTGGCGACCAACA 51266224 Query 14243 GCGTCAATTTCATCGATGAAAACGAT 14268 || || ||||||||||| || | ||| Sbjct 51266225 GCATCTATTTCATCGATAAAGATGAT 51266250 >seq20 Length=26302745 Score = 89.7 bits (98), Expect = 6e-13 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 130049 ATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTCTTCAACCAGAAAATC 130108 |||||||| || ||| || || ||||||||||| || | |||||||| |||| | || Sbjct 12394084 ATGAGTTCGTTGGAGTAGGTAAGGCCTGGCATGAGGCCTCTCTTCTTCAGCCAGTAGATA 12394143 Query 130109 GCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAACGCAAAGAGACGCTC 130167 ||| |||||||| |||||||| ||||||||||| || || || | |||||||| Sbjct 12394144 GCAGCGAATGAGCCTGAGAAGAAAATCCCCTCCACTGCTGCAAAAGCCACAAGACGCTC 12394202 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618435006739000