Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20hellerii_20[genbank_20GCA_5F001443345.1_202015-11-13] 25 sequences; 733,802,474 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq25 118 1e-21 seq18 98.7 1e-15 seq22 82.4 9e-11 >seq25 Length=32766887 Score = 118 bits (130), Expect = 1e-21 Identities = 891/1413 (63%), Gaps = 74/1413 (5%) Strand=Plus/Minus Query 104222 CCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGTC 104281 || ||| ||||| ||||| | ||| | | || || || ||| |||||| || | | | Sbjct 10521389 CCGCAGCACATGCTCATGAGGGTGTCGGTTGGGATCCACGGGCGAGACATCGACGCCGCC 10521330 Query 104282 TTGGAGACATACGACAAGATGTCCCA-AGGTATGTTCATTCACGCAACACCAACCCTCTT 104340 | ||||| ||| || |||| | | || ||||| ||||| | || |||||||| Sbjct 10521329 GTCGAGACCTACAACCTCCTGTCGGAGAAGTG-GTTCACCCACGCCTCTCCGACCCTCTT 10521271 Query 104341 CAATGCTGGTACACCAA--GACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAG 104398 ||| || || || ||| | || || |||||||||||||||| |||||| ||||| Sbjct 10521270 CAACGCCGGGAC--CAACCGGCCGCAGCTGTCCAGTTGCTTCCTGCTCGCCATGAAGGAC 10521213 Query 104399 GACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCT 104458 ||| ||| | || ||||| | || || | | |||| |||| || || |||| ||| Sbjct 10521212 GACAGCATCGAAGGCATCTACGACACCCTGAAGCAGTGCGCGCTCATTTCCAAGTCCGCT 10521153 Query 104459 GGGGGTATTGG---------GATGCACATCC-AT-GATGTGAGAGCCAATAAATCTCGTA 104507 || || || || || ||||| || || | || ||| || ||| | Sbjct 10521152 GGCGGGATCGGCGTGGCGGTGAGCTGCATCCGATCGACGGGA-AGC---TACATCGC--- 10521100 Query 104508 TTCGGGGGACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCA 104567 || || || || | || | || | | || ||||| | || | ||| || Sbjct 10521099 ----AGGCACCAACGGCAACTCCAACGGGTTGGTGCCGATGCTGAGAGTTTACAACAACA 10521044 Query 104568 CAGCGCGCTATGTAAATCAAGCTGGGCGTCGA-AAG------GGATCTATCGCAGTCTAT 104620 | || || || || | || ||||| | | ||| || | |||| | ||| Sbjct 10521043 CCGCTCGGTACGTTGACCA----GGGCGGCAACAAGAGACCCGGGGCCTTCGCCATGTAT 10520988 Query 104621 CTTGAGCCATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGAC 104680 || |||||||||||| || | | || ||||| ||| || ||| ||| | Sbjct 10520987 CTGGAGCCATGGCACTTCGACGTGTTCGACTTCCTGGAGCTGAAGAAGAACACAGGAAAG 10520928 Query 104681 GAGGAGGCGCGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAG 104740 |||||| | | | | || || |||| ||| | ||||| || || || ||||||||| Sbjct 10520927 GAGGAGCAGAGAGCCAGAGACCTTTTCTACGCCTTGTGGATCCCTGACCTGTTCATGAAG 10520868 Query 104741 AGAGTTGAGGAGAGTGGC---AATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTC 104797 ||||| |||||| | | ||||| | | ||||| | || ||||| || Sbjct 10520867 AGAGT---GGAGAGCAACCAGGACTGGTCCTTGATGTGTCCCAGCGAGTGTCCTGGGCTG 10520811 Query 104798 TCCGA-TGCCGTGGGTGAGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCG 104856 ||| ||| | ||| |||||||| || || ||||| || || ||| | ||||| | Sbjct 10520810 GACGAGTGCTG-GGGAGAGGAGTTCGAGAAGCTCTACACCAAATATGAGAAGGAAGGGAG 10520752 Query 104857 GGCGACTGCGACGGTGCCAGCTGCCG-ATGTGTGGAAAGCTATTCTCAAGTCTCAAACCG 104915 | || | |||| || || | | | ||| | || || || |||| || |||| Sbjct 10520751 AGTGAAAAGGGTGGTG-AAGGCGCAGCAGCTCTGGTACGCCATCATCGAGTCCCAGACCG 10520693 Query 104916 AGACTGGTACACCATACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGA 104975 | || || || || |||||||| ||||| ||||| || ||| ||||| || || ||| Sbjct 10520692 AAACCGGGACCCCCTACATGCTCTACAAGGACGCTTGCAACAGGAAGAGCAACCAGCAGA 10520633 Query 104976 ATTTGGGTGTGATCAAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAG 105035 | |||| |||||| | ||| ||||| || || | |||| | || ||| | Sbjct 10520632 ACCTGGGCACCATCAAGTGCAGCAACCTCTGCACGGAGGTGGTGGAGTACACCAGCAAGG 10520573 Query 105036 ATGAGACGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGA 105095 | ||| ||| || || ||||| || || ||||| ||| || ||| || |||||| Sbjct 10520572 ACGAGGTGGCCGTCTGCAACCTGGCCTCCATCGCCCTCAACATGTACGTCACGCCAGAG- 10520514 Query 105096 CAAAGACATTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAA 105155 ||| || || | | || || | || || || || |||||||| | Sbjct 10520513 --CGGACTTTCGACTTCAAGAAGCTGGCCTCCGTCACCAAGGTAATCGTGAAAAACCTCA 10520456 Query 105156 ACAGAGTTATTGATAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGAC 105215 ||| | || || | || | ||||| ||| || | || || | | | | Sbjct 10520455 ACAAGATCATCGACATCAACTACTACCCGGTTCCCGAAGCCGAGACTTCCAACAAGCGCC 10520396 Query 105216 ACCGTCCAATTGGTCTCGGTGTTCAGGGTCTCGCGGATGTATTCATTCTTTGTCGCCACG 105275 || | || || || |||| || |||||||| || || | ||||| || || ||| Sbjct 10520395 ACAGGCCGATCGGGATCGGCGTCCAGGGTCTGGCCGACGCCTTCATCCTGATGCGGCACC 10520336 Query 105276 CATTTG--ATTCCGACGAAGCGAAGGAAATCAATGCGCGCATATTTGAGACCATGTATCA 105333 | || | | ||| |||||| || |||| | || || |||||||| || || Sbjct 10520335 CTTTCGAAAGTCC--CGAAGCTCAGCTGCTCAACATCCAGATGTTCGAGACCATCTACCA 10520278 Query 105334 CGCCGCTCTTGAGGCGAGTTCAGAGTT---GGCAGAGGTTGATGGTCCATATGAAACCTT 105390 |||||| || ||||| || | ||| | |||||| | || || || || || | Sbjct 10520277 CGCCGCCCTGGAGGCCAGCTGCGAGCTCGCCGCAGAGCT---CGGCCCCTACGAGACGTA 10520221 Query 105391 TGAGGGTTCTCCAGCTTCA-CAAGGG-GTGCTTCAATTTGATATGTGG--GAAGGTG-AG 105445 ||||| || || | ||| |||||| | || || | || |||||| |||| | | Sbjct 10520220 CGAGGGCTCGCC--CGTCAGCAAGGGCATCCTCCAGTACGACATGTGGGAGAAGACGCCG 10520163 Query 105446 ACCAAGCTTCACTACGACTGGGAAGCT-CTCAAGGAACGCATCAAGGAGAAGGGTCTTCG 105504 ||| | ||| | |||| ||||||| || |||||| ||| | | || | | Sbjct 10520162 ACCGACCTT---TGGGACT-GGAAGCTGCTGAAGGAAAAGATCGGCAAACACGGCGTGAG 10520107 Query 105505 TAACAGTCTCCTCATGGCTCCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAA 105564 ||||| || || |||| || ||||| || || |||||||| || ||| |||| || || Sbjct 10520106 GAACAGCCTGCTGCTGGCGCCCATGCCCACGGCGTCCACCGCCCAGATCCTGGGCAACAA 10520047 Query 105565 TGAATGCTTTGAACCCTACACGACGAACATCTA 105597 || | | | || | ||||| | |||||||| Sbjct 10520046 CGAGTCCATCGAGGCGTACACCAGCAACATCTA 10520014 >seq18 Length=80077792 Score = 98.7 bits (108), Expect = 1e-15 Identities = 167/238 (70%), Gaps = 8/238 (3%) Strand=Plus/Plus Query 9503 GGGAGAGCTACTTGGATCTTACGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGG 9562 ||| || | ||| || || | |||||| || |||||||| || || || ||| || Sbjct 51266024 GGGCGACCAACTAAGACTTTTCTATCAAAACGTCCTGGACGGAGAAGAGCTGGATCTAGA 51266083 Query 9563 ATATCAACGCGATTCGTCGCGGCGATGACAACAATACCTGTTTCATTA---TCAAAACCA 9619 | ||| || |||||||| ||||| || | || ||| ||||| ||||||||| Sbjct 51266084 ACATCTGAACGGTTCGTCGCAGCGATAACGATGATCCCT---TCATTTCCCTCAAAACCA 51266140 Query 9620 TCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCT-GGCATACC 9678 ||||| || |||| |||||||| | |||||||| ||||||||||| || | || Sbjct 51266141 TCCATTTCAATCAAGAGTTGGTTCAAGGTTTGTTCACGTTCATCATTTCCTCCACCTA-G 51266199 Query 9679 ACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCATGGT 9736 ||| ||| ||||| || || ||||| || ||||| || |||| |||| |||| Sbjct 51266200 GCCAACACCACGTTGGCGACCAACAGCATCTATTTCATCGATAAAGATGATGGCTGGT 51266257 >seq22 Length=23629796 Score = 82.4 bits (90), Expect = 9e-11 Identities = 84/110 (76%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 94827 TGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGG 94886 ||| ||||| ||||||||||||||||| ||| | | || | ||||| |||||| |||| Sbjct 3940872 TGTGGAGGGAATCTTCTTCTCTGGTTCGTTCGCCTCCATCTTCTGGCTGAAGAAGAGAGG 3940931 Query 94887 TCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGG 94936 || ||||| || || |||| ||||||||| ||| || ||||||| Sbjct 3940932 CCTGATGCCCGGCCTGACCTTCAGCAACGAGCTCATCAGCCGAGACGAGG 3940981 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583260617731000